YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30258775, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	262 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30258775, gi|....

Description	E-value	Query Range	Subject Range
gi\|228799345, gi... - gi\|228960321\|ref\|ZP_04121974.1\| Glucosamine-6-phosphate deaminase [Bacillus thuringiensis serovar pa... gi\|229047746, gi... - gi\|229047746\|ref\|ZP_04193326.1\| Glucosamine-6-phosphate deaminase [Bacillus cereus AH676], gi\|228723... gi\|228671910, gi... - gi\|229111528\|ref\|ZP_04241079.1\| Glucosamine-6-phosphate deaminase [Bacillus cereus Rock1-15], gi\|228... gi\|229129335, gi... - gi\|229129335\|ref\|ZP_04258306.1\| Glucosamine-6-phosphate deaminase [Bacillus cereus BDRD-Cer4], gi\|22... gi\|229071559, gi... - gi\|229071559\|ref\|ZP_04204777.1\| Glucosamine-6-phosphate deaminase [Bacillus cereus F65185], gi\|22871... gi\|229081311, gi... - gi\|229081311\|ref\|ZP_04213814.1\| Glucosamine-6-phosphate deaminase [Bacillus cereus Rock4-2], gi\|2287... gi\|229180333, gi... - gi\|229180333\|ref\|ZP_04307676.1\| Glucosamine-6-phosphate deaminase [Bacillus cereus 172560W], gi\|2286... gi\|228591217, gi... - gi\|229192267\|ref\|ZP_04319232.1\| Glucosamine-6-phosphate deaminase [Bacillus cereus ATCC 10876], gi\|2... gi\|228636799, gi... - gi\|229146629\|ref\|ZP_04274996.1\| Glucosamine-6-phosphate deaminase [Bacillus cereus BDRD-ST24], gi\|22... gi\|229152257, gi... - gi\|229152257\|ref\|ZP_04280450.1\| Glucosamine-6-phosphate deaminase [Bacillus cereus m1550], gi\|228631... NAGB_BACCR - Glucosamine-6-phosphate deaminase OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 1... NAGB_BACC4 - Glucosamine-6-phosphate deaminase OS=Bacillus cereus (strain B4264) GN=nagB PE=3 SV=1 gi\|206971117, gi... - gi\|206971117\|ref\|ZP_03232068.1\| glucosamine-6-phosphate isomerase [Bacillus cereus AH1134], gi\|20673...	6.0E-83	[1..262]	[1..262]
NAGB_BACCN - Glucosamine-6-phosphate deaminase OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / ...	1.0E-82	[1..262]	[1..262]
gi\|47565936, gi\|... - gi\|47565936\|ref\|ZP_00236975.1\| glucosamine-6-phosphate isomerase [Bacillus cereus G9241], gi\|4755721...	3.0E-82	[1..262]	[1..262]
gi\|228648539, gi... - gi\|229134864\|ref\|ZP_04263671.1\| Glucosamine-6-phosphate deaminase [Bacillus cereus BDRD-ST196], gi\|2... NAGB_BACWK - Glucosamine-6-phosphate deaminase OS=Bacillus weihenstephanensis (strain KBAB4) GN=nagB PE=3 SV=1	4.0E-81	[1..262]	[1..262]
gi\|114593868 - gi\|114593868\|ref\|XP_001143245.1\| PREDICTED: similar to glucosamine-6-phosphate deaminase 2 variant [...	8.0E-79	[1..254]	[124..390]
gi\|148226212, gi... - gi\|38014417\|gb\|AAH60459.1\| MGC68566 protein [Xenopus laevis], gi\|148226212\|ref\|NP_001083469.1\| hypot...	2.0E-78	[1..254]	[1..267]
gi\|73949474 - gi\|73949474\|ref\|XP_535222.2\| PREDICTED: similar to Glucosamine-6-phosphate isomerase (Glucosamine-6-...	7.0E-78	[1..254]	[1..267]
gi\|40789072 - gi\|40789072\|dbj\|BAA06544.2\| KIAA0060 [Homo sapiens]	2.0E-77	[1..254]	[29..295]

Back

Predicted Domain #1

Region A:
Residues: [1-262]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNILVVKTPE ELAEAGYKLI EEVVKTKENP TLGMATGSSP LGIYAEMRKN KLDTSRVTTV  60
   61 NLDEYVNLPH EDKNSYHYFM QEQLFDHLPF KQTYVPNGMA SDLEEECKRY EGILAANPVD 120
  121 LQILGIGENG HIGFNEPGTP FNSPTNIVEL TESTRQANLR FFEKEEDVPT HAITMGIGSI 180
  181 MKAKQILLVA MGSKKAEAVK ELLQGAYSEA CPATVLQRHP NVTVIADQEA LSLCSEAIAD 240
  241 EHRQVFTISD LLSDSRVGET AN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	69.39794
Match:	2bkvA
Description:	Structure and kinetics of a monomeric glucosamine-6-phosphate deaminase: missing link of the NagB superfamily
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits