YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30264252, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	630 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264252, gi|....

Description	E-value	Query Range	Subject Range
gi\|47076771 - gi\|47076771\|dbj\|BAD18314.1\| 1-deoxyxylulose-5-phosphate synthase [Geobacillus stearothermophilus]	0.0	[1..630]	[1..630]
gi\|88923233, gi\|... - gi\|88947315\|ref\|ZP_01150316.1\| Deoxyxylulose-5-phosphate synthase [Desulfotomaculum reducens MI-1], ...	0.0	[3..621]	[8..622]
DXS_GEOKA - 1-deoxy-D-xylulose-5-phosphate synthase OS=Geobacillus kaustophilus (strain HTA426) GN=dxs PE=3 SV=1 DXS_GEOKA - 1-deoxy-D-xylulose-5-phosphate synthase OS=Geobacillus kaustophilus GN=dxs PE=3 SV=1	0.0	[4..630]	[2..628]
DXS_BACCN - 1-deoxy-D-xylulose-5-phosphate synthase OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391...	0.0	[1..630]	[1..630]
DXS_BACC1 - 1-deoxy-D-xylulose-5-phosphate synthase OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=dxs PE=3...	0.0	[1..630]	[1..630]
gi\|229152379, gi... - gi\|229152379\|ref\|ZP_04280571.1\| 1-deoxy-D-xylulose-5-phosphate synthase [Bacillus cereus m1550], gi\|... gi\|229146752, gi... - gi\|229146752\|ref\|ZP_04275117.1\| 1-deoxy-D-xylulose-5-phosphate synthase [Bacillus cereus BDRD-ST24],... gi\|228654062, gi... - gi\|229129457\|ref\|ZP_04258428.1\| 1-deoxy-D-xylulose-5-phosphate synthase [Bacillus cereus BDRD-Cer4],... gi\|228671787, gi... - gi\|229111652\|ref\|ZP_04241202.1\| 1-deoxy-D-xylulose-5-phosphate synthase [Bacillus cereus Rock1-15], ... DXS_BACCR - 1-deoxy-D-xylulose-5-phosphate synthase OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / ... gi\|228922932, gi... - gi\|228922932\|ref\|ZP_04086226.1\| 1-deoxy-D-xylulose-5-phosphate synthase [Bacillus thuringiensis sero... gi\|229047873, gi... - gi\|229047873\|ref\|ZP_04193449.1\| 1-deoxy-D-xylulose-5-phosphate synthase [Bacillus cereus AH676], gi\|... gi\|228778799, gi... - gi\|228980863\|ref\|ZP_04141167.1\| 1-deoxy-D-xylulose-5-phosphate synthase [Bacillus thuringiensis Bt40... gi\|228974270, gi... - gi\|228974270\|ref\|ZP_04134839.1\| 1-deoxy-D-xylulose-5-phosphate synthase [Bacillus thuringiensis sero... DXS_BACC4 - 1-deoxy-D-xylulose-5-phosphate synthase OS=Bacillus cereus (strain B4264) GN=dxs PE=3 SV=1 gi\|228818264, gi... - gi\|228941338\|ref\|ZP_04103890.1\| 1-deoxy-D-xylulose-5-phosphate synthase [Bacillus thuringiensis sero...	0.0	[1..630]	[1..630]
DXS_BACWK - 1-deoxy-D-xylulose-5-phosphate synthase OS=Bacillus weihenstephanensis (strain KBAB4) GN=dxs PE=3 SV...	0.0	[1..630]	[1..630]
gi\|21402228, gi\|... - gi\|65321562\|ref\|ZP_00394521.1\| COG1154: Deoxyxylulose-5-phosphate synthase [Bacillus anthracis str. ...	0.0	[1..630]	[1..630]
gi\|47569436, gi\|... - gi\|47569436\|ref\|ZP_00240117.1\| deoxyxylulose-5-phosphate synthase [Bacillus cereus G9241], gi\|475538...	0.0	[2..630]	[5..633]
DXS2_GEOMG - 1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / ...	0.0	[1..630]	[1..630]

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Predicted Domain #1

Region A:
Residues: [1-630]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLTQIQNPS FLKDMSISEL EGLSEDIRKF LIEELSQTGG HIAPNLGVVE LTIALHKLFD  60
   61 SPKDKFLWDV GHQSYVHKIL TGRAKEFGTL RQYQGLCGFP KRCESEHDVW ETGHSSTSLS 120
  121 AAMGMALARD LKKTKEYVIP IIGDGALTGG MALEALNHIG HEKTDMIVIL NDNEMSIAPN 180
  181 VGALHNVLGR LRTAGKYHWV KDELEYILKK IPAVGGKVAA TAEKIKDSLK YLLVSGVFFE 240
  241 ELGFTYLGPV DGHDYEKLFE TLQYAKKTKG PVLVHVITKK GKGYKPAESD VIGTWHGTGP 300
  301 YKIESGDFVK PKEVAPAWSA VVSETVLKLA RTDERIVAIT PAMPVGSKLE KFQKEFPDRM 360
  361 IDVGIAEQHA TTMAAGMATQ GMKPFLAIYS TFLQRAYDQV VHDICRQNLN VFIGIDRSGL 420
  421 VGADGETHQG VFDISFLRHL PNMVIMMPKD ENEGQHLVYT AMQYEDGPIA LRYARGNGLG 480
  481 VHMDEELKAI PIGSWETLKE GTQAAILTFG TTIPMAMEAA ERLEKAGVSV KVVNARFIKP 540
  541 MDEAYLHDLL GKNIPILTIE EACLIGGFGT GVVEFASENG YHSALVERMG IPDRFIEHGS 600
  601 VTKLLEEIGL TTDAVVDRIH TMIPSKQKRA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	137.0
Match:	2o1sA
Description:	No description for 2o1sA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits