YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30264253, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	296 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264253, gi|....

Description	E-value	Query Range	Subject Range
gi\|20386366 - gi\|20386366\|gb\|AAM21638.1\|AF492022_1 geranylgeranyl pyrophosphate synthase [Cistus incanus subsp. cr...	7.0E-89	[2..296]	[70..364]
gi\|58201026 - gi\|58201026\|gb\|AAW66658.1\| geranyl diphosphate synthase [Picrorhiza kurrooa]	2.0E-88	[2..296]	[77..371]
gi\|56122554 - gi\|56122554\|gb\|AAV74395.1\| geranylgeranyl diphosphate synthase [Adonis aestivalis var. palaestina]	4.0E-88	[1..296]	[69..364]
gi\|46241274 - gi\|46241274\|gb\|AAS82860.1\| geranyl diphosphate synthase large subunit [Antirrhinum majus]	1.0E-87	[2..296]	[78..372]
gi\|92868507, gi\|... - gi\|92871726\|gb\|ABE80654.1\| Polyprenyl synthetase [Medicago truncatula], gi\|92868507\|gb\|ABE78512.1\| P...	3.0E-87	[3..296]	[79..372]
gi\|34484306 - gi\|34484306\|gb\|AAQ72786.1\| geranylgeranyl diphosphate synthase [Ginkgo biloba]	4.0E-87	[3..296]	[97..391]
gi\|17352451 - gi\|17352451\|gb\|AAL17614.2\|AF425235_1 geranylgeranyl diphosphate synthase [Abies grandis]	1.0E-86	[3..296]	[89..383]
gi\|6277254 - gi\|6277254\|dbj\|BAA86284.1\| geranylgeranyl pyrophosphate synthase [Croton sublyratus]	2.0E-86	[3..296]	[75..368]
gi\|9971808 - gi\|9971808\|gb\|AAG10424.1\| GGDP synthase [Tagetes erecta]	8.0E-86	[3..296]	[69..361]
gi\|4322331 - gi\|4322331\|gb\|AAD16018.1\| geranylgeranyl diphosphate synthase [Taxus canadensis] gi\|44972242, gi\|... - gi\|45505274\|gb\|AAS67008.1\| geranylgeranyl diphosphate synthase [Taxus x media], gi\|44972242\|gb\|AAS49... gi\|86277807 - gi\|86277807\|gb\|ABC88389.1\| geranylgeranyl diphosphate synthase [Taxus wallichiana]	9.0E-86	[3..296]	[99..393]

Back

Predicted Domain #1

Region A:
Residues: [1-296]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIAFDTFLK ESKTFVEEKL VSYANELQCP NVLREAMAYS LEAGGKRLRP LLLFATLQAF  60
   61 DKERNLGVGA ACALEMIHTY SLVHDDLPCM DDDDLRRGKP TNHKVFGEAM AVLAGDGLLT 120
  121 YAFQVIMAYG QKEISAEKKV RLVLELAKAA GPEGMVGGQV ADMEAEGKQL TIDELEYIHK 180
  181 HKTGKLLEFA VLAGSILSDA TEEQEEKLLE FAKYIGLAFQ IRDDILDVEG TEEEIGKPIG 240
  241 SDVSNEKSTY TTLFTVDRAK DILDETIAKA KDAIGSLQLQ DEYLLSICDL IAKRNN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	75.154902
Match:	2j1pA
Description:	No description for 2j1pA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits