YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30264254, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	76 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264254, gi|....

Description	E-value	Query Range	Subject Range
gi\|71274977, gi\|... - gi\|71274977\|ref\|ZP_00651265.1\| Exonuclease VII, small subunit [Xylella fastidiosa Dixon], gi\|7116470... gi\|71729918, gi\|... - gi\|71900343\|ref\|ZP_00682478.1\| Exonuclease VII, small subunit [Xylella fastidiosa Ann-1], gi\|7172991...	89.0	[0..2]	[71..58]
gi\|71898769, gi\|... - gi\|71898769\|ref\|ZP_00680938.1\| Exonuclease VII, small subunit [Xylella fastidiosa Ann-1], gi\|7173153...	88.0	[0..2]	[71..58]
gi\|67085211, gi\|... - gi\|67157942\|ref\|ZP_00419087.1\| Exonuclease VII, small subunit [Azotobacter vinelandii AvOP], gi\|6708... gi\|67157942 - gi\|67157942\|ref\|ZP_00419087.1\| Exonuclease VII, small subunit [Azotobacter vinelandii AvOP]	82.0	[0..2]	[75..28]
gi\|89952462, gi\|... - gi\|90022862\|ref\|YP_528689.1\| exodeoxyribonuclease VII small subunit [Saccharophagus degradans 2-40],...	80.0	[0..2]	[73..39]
gi\|83593949, gi\|... - gi\|83593949\|ref\|YP_427701.1\| exodeoxyribonuclease VII small subunit [Rhodospirillum rubrum ATCC 1117...	79.0	[0..3]	[73..50]
gi\|71557653, gi\|... - gi\|71737100\|ref\|YP_272901.1\| exodeoxyribonuclease VII, small subunit [Pseudomonas syringae pv. phase...	78.0	[0..2]	[75..36]
gi\|111620503, gi... - gi\|111620503\|ref\|ZP_01407483.1\| exodeoxyribonuclease VII, small subunit [Acidovorax avenae subsp. ci...	78.0	[0..3]	[68..91]
gi\|67549344, gi\|... - gi\|67549344\|ref\|ZP_00427210.1\| Exonuclease VII, small subunit [Burkholderia vietnamiensis G4], gi\|67...	76.0	[0..7]	[67..53]
EX7S_ERWCT - Exodeoxyribonuclease 7 small subunit OS=Erwinia carotovora subsp. atroseptica GN=xseB PE=3 SV=1 EX7S_PECAS - Exodeoxyribonuclease 7 small subunit OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672...	76.0	[0..2]	[74..6]

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Predicted Domain #1

Region A:
Residues: [1-76]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENKLSFEEA ISQLEHLVSK LEQGDVPLEE AISYFKEGME LSKLCDEKLK NVQEQMAVIL  60
   61 GEDGELEPFT ALGDEA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.69897
Match:	1vp7A
Description:	Crystal structure of Exodeoxyribonuclease VII small subunit (NP_881400.1) from Bordetella pertussis at 2.40 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

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Top Sequence Alignment Hits