YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259102, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	231 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259102, gi|....

Description	E-value	Query Range	Subject Range
MTNN_VIBVU - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Vibrio vulnificus (strain CMCP6) GN=mt... MTNN_VIBVU - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Vibrio vulnificus GN=mtnN PE=3 SV=1	1.0E-52	[1..231]	[1..231]
MTNN_VIBVY - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Vibrio vulnificus (strain YJ016) GN=mt...	2.0E-52	[1..231]	[1..231]
gi\|75819925, gi\|... - gi\|75819925\|ref\|ZP_00749986.1\| COG0775: Nucleoside phosphorylase [Vibrio cholerae V51], gi\|254226150...	8.0E-52	[1..231]	[1..231]
gi\|126519706, gi... - gi\|229512247\|ref\|ZP_04401726.1\| 5'-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosid... gi\|194535206, gi... - gi\|75823413\|ref\|ZP_00752916.1\| COG0775: Nucleoside phosphorylase [Vibrio cholerae RC385], gi\|2542235... gi\|116187810, gi... - gi\|75828836\|ref\|ZP_00758172.1\| COG0775: Nucleoside phosphorylase [Vibrio cholerae MO10], gi\|25484950... MTNN_VIBC3 - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Vibrio cholerae serotype O1 (strain AT... MTNN_VIBCM - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Vibrio cholerae serotype O1 (strain M6... gi\|121727503, gi... - gi\|75816484\|ref\|ZP_00746953.1\| COG0775: Nucleoside phosphorylase [Vibrio cholerae V52], gi\|121727503... gi\|229355062, gi... - gi\|229507557\|ref\|ZP_04397062.1\| 5'-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosid... gi\|229519383, gi... - gi\|229519383\|ref\|ZP_04408826.1\| 5'-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosid... gi\|229521212, gi... - gi\|229521212\|ref\|ZP_04410632.1\| 5'-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosid... gi\|90074872 - gi\|90074872\|dbj\|BAE87113.1\| MTA/SAH nucleosidase [Vibrio cholerae bv. albensis] gi\|229524369, gi... - gi\|229524369\|ref\|ZP_04413774.1\| 5'-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosid... gi\|229332405, gi... - gi\|229528631\|ref\|ZP_04418021.1\| 5'-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosid... gi\|229607063, gi... - gi\|229607063\|ref\|YP_002877711.1\| 5'-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosi... gi\|148875697, gi... - gi\|153828821\|ref\|ZP_01981488.1\| MTA/SAH nucleosidase [Vibrio cholerae 623-39], gi\|148875697\|gb\|EDL73... MTNN_VIBCH - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Vibrio cholerae GN=mtnN PE=1 SV=1 gi\|121547542, gi... - gi\|121588200\|ref\|ZP_01677944.1\| MTA/SAH nucleosidase [Vibrio cholerae 2740-80], gi\|121547542\|gb\|EAX5... gi\|124114403, gi... - gi\|153216216\|ref\|ZP_01950320.1\| MTA/SAH nucleosidase [Vibrio cholerae 1587], gi\|124114403\|gb\|EAY3322... gi\|124118458, gi... - gi\|153223035\|ref\|ZP_01953610.1\| MTA/SAH nucleosidase [Vibrio cholerae MAK 757], gi\|124118458\|gb\|EAY3... MTNN_VIBCH - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Vibrio cholerae serotype O1 (strain AT... gi\|153819136, gi... - gi\|153819136\|ref\|ZP_01971803.1\| MTA/SAH nucleosidase [Vibrio cholerae NCTC 8457], gi\|126510326\|gb\|EA...	1.0E-51	[1..231]	[1..231]
gi\|194539253, gi... - gi\|75855252\|ref\|ZP_00762909.1\| COG0775: Nucleoside phosphorylase [Vibrio sp. Ex25], gi\|254229687\|ref...	6.0E-51	[1..231]	[1..231]
gi\|157734207 - gi\|157734207\|gb\|ABV68926.1\| S-adenosylhomocysteine nucleosidase enzyme [Vibrio alginolyticus] gi\|91226817, gi\|... - gi\|91226817\|ref\|ZP_01261470.1\| 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [Vibrio al...	1.0E-50	[1..231]	[1..231]
MTNN_VIBF1 - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Vibrio fischeri (strain ATCC 700601 / ... MTNN_VIBFM - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Vibrio fischeri (strain MJ11) GN=mtnN ...	2.0E-50	[1..231]	[1..231]
gi\|48826037 - ref\|ZP_00287265.1\| COG0775: Nucleoside phosphorylase [Enterococcus faecium] gi\|68196161, gi\|... - gi\|69244807\|ref\|ZP_00603031.1\| Purine and other phosphorylases, family 1 [Enterococcus faecium DO], ...	2.0E-50	[1..230]	[1..229]
gi\|89095310, gi\|... - gi\|89095310\|ref\|ZP_01168229.1\| 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [Oceanospi...	2.0E-50	[1..230]	[18..247]
MTNN_VIBPA - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Vibrio parahaemolyticus serotype O3:K6... gi\|153838415, gi... - gi\|153838415\|ref\|ZP_01991082.1\| MTA/SAH nucleosidase [Vibrio parahaemolyticus AQ3810], gi\|149748178\|... MTNN_VIBPA - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Vibrio parahaemolyticus GN=mtnN PE=3 S...	3.0E-50	[1..231]	[1..231]

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Predicted Domain #1

Region A:
Residues: [1-231]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIAVIGAME EEVRILRDKL EQAETETVAG CEFTKGQLAG HEVILLKSGI GKVNAAMSTT  60
   61 ILLERYKPEK VINTGSAGGF HHSLNVGDVV ISTEVRHHDV DVTAFNYEYG QVPGMPPGFK 120
  121 ADEALVALAE KCMQAEENIQ VVKGMIATGD SFMSDPNRVA AIRDKFENLY AVEMEAAAVA 180
  181 QVCHQYEVPF VIIRALSDIA GKESNVSFDQ FLDQAALHST NFIVKVLEEL K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.30103
Match:	1jysA
Description:	5'-Methylthioadenosine/S-Adenosylhomocysteine nucleosidase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
S-methyl-5-thioadenosine phosphorylase activity	3.89303327575747	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	3.66765825367784	bayes_pls_golite062009
transferase activity, transferring pentosyl groups	3.65908655017573	bayes_pls_golite062009
catalytic activity	2.18268586151113	bayes_pls_golite062009
purine-nucleoside phosphorylase activity	1.46980781918487	bayes_pls_golite062009
binding	0.716947367672324	bayes_pls_golite062009
transferase activity	0.716715652241981	bayes_pls_golite062009
protein binding	0.294648445670962	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: