YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259145, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	379 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259145, gi|....

Description	E-value	Query Range	Subject Range
gi\|145953288, gi... - gi\|90573603\|ref\|ZP_01230116.1\| hypothetical protein CdifQ_02003107 [Clostridium difficile QCD-32g58]...	0.0	[1..373]	[7..379]
gi\|126700418, gi... - gi\|126700418\|ref\|YP_001089315.1\| queuine tRNA-ribosyltransferase [Clostridium difficile 630], gi\|115...	0.0	[1..373]	[7..379]
gi\|228910253, gi... - gi\|228910253\|ref\|ZP_04074071.1\| Queuine tRNA-ribosyltransferase [Bacillus thuringiensis IBL 200], gi... TGT_BACC2 - Queuine tRNA-ribosyltransferase OS=Bacillus cereus (strain G9842) GN=tgt PE=3 SV=1 gi\|228923169, gi... - gi\|228923169\|ref\|ZP_04086460.1\| Queuine tRNA-ribosyltransferase [Bacillus thuringiensis serovar huaz... gi\|228856729, gi... - gi\|228902945\|ref\|ZP_04067086.1\| Queuine tRNA-ribosyltransferase [Bacillus thuringiensis IBL 4222], g... gi\|228798996, gi... - gi\|228960690\|ref\|ZP_04122334.1\| Queuine tRNA-ribosyltransferase [Bacillus thuringiensis serovar paki... gi\|228967493, gi... - gi\|228967493\|ref\|ZP_04128521.1\| Queuine tRNA-ribosyltransferase [Bacillus thuringiensis serovar sott... TGT_BACC4 - Queuine tRNA-ribosyltransferase OS=Bacillus cereus (strain B4264) GN=tgt PE=3 SV=1 gi\|228818092, gi... - gi\|228941585\|ref\|ZP_04104133.1\| Queuine tRNA-ribosyltransferase [Bacillus thuringiensis serovar berl... gi\|206969844, gi... - gi\|206969844\|ref\|ZP_03230798.1\| queuine tRNA-ribosyltransferase [Bacillus cereus AH1134], gi\|2067355... gi\|228954701, gi... - gi\|228954701\|ref\|ZP_04116724.1\| Queuine tRNA-ribosyltransferase [Bacillus thuringiensis serovar kurs... TGT_BACCR - Queuine tRNA-ribosyltransferase OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 153... gi\|229048126, gi... - gi\|229048126\|ref\|ZP_04193697.1\| Queuine tRNA-ribosyltransferase [Bacillus cereus AH676], gi\|22872322... gi\|228711221, gi... - gi\|229071925\|ref\|ZP_04205136.1\| Queuine tRNA-ribosyltransferase [Bacillus cereus F65185], gi\|2287112... gi\|228974514, gi... - gi\|228974514\|ref\|ZP_04135081.1\| Queuine tRNA-ribosyltransferase [Bacillus thuringiensis serovar thur... gi\|228981108, gi... - gi\|228981108\|ref\|ZP_04141409.1\| Queuine tRNA-ribosyltransferase [Bacillus thuringiensis Bt407], gi\|2... gi\|228653814, gi... - gi\|229129697\|ref\|ZP_04258665.1\| Queuine tRNA-ribosyltransferase [Bacillus cereus BDRD-Cer4], gi\|2286... gi\|228636485, gi... - gi\|229146988\|ref\|ZP_04275350.1\| Queuine tRNA-ribosyltransferase [Bacillus cereus BDRD-ST24], gi\|2286... gi\|228701685, gi... - gi\|229081681\|ref\|ZP_04214176.1\| Queuine tRNA-ribosyltransferase [Bacillus cereus Rock4-2], gi\|228701... gi\|228671645, gi... - gi\|229111889\|ref\|ZP_04241435.1\| Queuine tRNA-ribosyltransferase [Bacillus cereus Rock1-15], gi\|22867... gi\|228590935, gi... - gi\|229192628\|ref\|ZP_04319589.1\| Queuine tRNA-ribosyltransferase [Bacillus cereus ATCC 10876], gi\|228... gi\|229152620, gi... - gi\|229152620\|ref\|ZP_04280809.1\| Queuine tRNA-ribosyltransferase [Bacillus cereus m1550], gi\|22863088... gi\|228602838, gi... - gi\|229180693\|ref\|ZP_04308033.1\| Queuine tRNA-ribosyltransferase [Bacillus cereus 172560W], gi\|228602...	0.0	[1..379]	[1..379]
gi\|47556637, gi\|... - gi\|47566607\|ref\|ZP_00237429.1\| queuine tRNA-ribosyltransferase [Bacillus cereus G9241], gi\|47556637\|... gi\|228772055, gi... - gi\|228987670\|ref\|ZP_04147782.1\| Queuine tRNA-ribosyltransferase [Bacillus thuringiensis serovar toch... gi\|228625485, gi... - gi\|229158032\|ref\|ZP_04286103.1\| Queuine tRNA-ribosyltransferase [Bacillus cereus ATCC 4342], gi\|2286... gi\|229025879, gi... - gi\|229025879\|ref\|ZP_04182275.1\| Queuine tRNA-ribosyltransferase [Bacillus cereus AH1272], gi\|2287354... gi\|228608387, gi... - gi\|229175091\|ref\|ZP_04302608.1\| Queuine tRNA-ribosyltransferase [Bacillus cereus MM3], gi\|228608387\|...	0.0	[1..379]	[1..379]
gi\|89084485, gi\|... - gi\|89100782\|ref\|ZP_01173635.1\| queuine tRNA-ribosyltransferase [Bacillus sp. NRRL B-14911], gi\|89084...	0.0	[1..379]	[1..379]
TGT_CALS4 - Queuine tRNA-ribosyltransferase OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15... TGT_THETN - Queuine tRNA-ribosyltransferase OS=Thermoanaerobacter tengcongensis GN=tgt PE=3 SV=1	0.0	[1..373]	[1..373]
TGT_BACCN - Queuine tRNA-ribosyltransferase OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NV...	0.0	[1..379]	[1..379]
TGT_BACHD - Queuine tRNA-ribosyltransferase OS=Bacillus halodurans GN=tgt PE=3 SV=1 TGT_BACHD - Queuine tRNA-ribosyltransferase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 ...	0.0	[1..379]	[1..379]
TGT_LISIN - Queuine tRNA-ribosyltransferase OS=Listeria innocua GN=tgt PE=3 SV=1 TGT_LISIN - Queuine tRNA-ribosyltransferase OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=tgt PE=3 SV=1	0.0	[1..379]	[1..379]
gi\|269203264\|ref... - queuine tRNA-ribosyltransferase [Staphylococcus aureus subsp. aureus ED98] TGT_STAAW - Queuine tRNA-ribosyltransferase OS=Staphylococcus aureus (strain MW2) GN=tgt PE=3 SV=1 TGT_STAA1 - Queuine tRNA-ribosyltransferase OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=tgt PE=3 SV=1 TGT_STAAE - Queuine tRNA-ribosyltransferase OS=Staphylococcus aureus (strain Newman) GN=tgt PE=3 SV=1 gi\|227245749, gi... - gi\|227557839\|ref\|ZP_03987886.1\| queuine tRNA-ribosyltransferase [Staphylococcus aureus subsp. aureus... gi\|227851810, gi... - gi\|227899850\|ref\|ZP_04017655.1\| queuine tRNA-ribosyltransferase [Staphylococcus aureus subsp. aureus... gi\|251814637, gi... - gi\|251814637\|ref\|ZP_04829110.1\| queuine tRNA-ribosyltransferase [Staphylococcus aureus subsp. aureus... TGT_STAAM - Queuine tRNA-ribosyltransferase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=tgt PE=3 SV=... gi\|253317210 - gi\|253317210\|ref\|ZP_04840423.1\| queuine tRNA-ribosyltransferase [Staphylococcus aureus subsp. aureus... TGT_STAAN - Queuine tRNA-ribosyltransferase OS=Staphylococcus aureus (strain N315) GN=tgt PE=1 SV=1 gi\|253732295, gi... - gi\|253732295\|ref\|ZP_04866460.1\| queuine tRNA-ribosyltransferase [Staphylococcus aureus subsp. aureus... gi\|87162122\|ref\|... - queuine tRNA-ribosyltransferase [Staphylococcus aureus subsp. aureus USA300], queuine tRNA-ribosyltr... TGT_STAAC - Queuine tRNA-ribosyltransferase OS=Staphylococcus aureus (strain COL) GN=tgt PE=3 SV=1 gi\|255006424 - gi\|255006424\|ref\|ZP_05145025.2\| queuine tRNA-ribosyltransferase [Staphylococcus aureus subsp. aureus... TGT_STAA8 - Queuine tRNA-ribosyltransferase OS=Staphylococcus aureus (strain NCTC 8325) GN=tgt PE=3 SV=1 TGT_STAA3 - Queuine tRNA-ribosyltransferase OS=Staphylococcus aureus (strain USA300) GN=tgt PE=3 SV=1 TGT_STAA2 - Queuine tRNA-ribosyltransferase OS=Staphylococcus aureus (strain JH1) GN=tgt PE=3 SV=1 TGT_STAA9 - Queuine tRNA-ribosyltransferase OS=Staphylococcus aureus (strain JH9) GN=tgt PE=3 SV=1 TGT_STAAS - Queuine tRNA-ribosyltransferase OS=Staphylococcus aureus (strain MSSA476) GN=tgt PE=3 SV=1 gi\|25319728 - pir\|\|F89946 tRNA-guanine transglycosylase tgt [imported] - Staphylococcus aureus (strain N315) TGT_STAAR - Queuine tRNA-ribosyltransferase OS=Staphylococcus aureus (strain MRSA252) GN=tgt PE=3 SV=1 gi\|221141092 - gi\|221141092\|ref\|ZP_03565585.1\| queuine tRNA-ribosyltransferase [Staphylococcus aureus subsp. aureus... TGT_STAAT - Queuine tRNA-ribosyltransferase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=tgt PE=3 SV=1	0.0	[1..379]	[1..379]

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Predicted Domain #1

Region A:
Residues: [1-379]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAIRYEFIK TCKQTGARLG RVHTPHGSFD TPTFMPVGTL ATVKTMSPEE LKAMDSGIIL  60
   61 SNTYHLWLRP GHEIIREAGG LHKFMNWDRA ILTDSGGFQV FSLSDFRRIE EEGVHFRNHL 120
  121 NGDKLFLSPE KAMEIQNALG SDIMMAFDEC PPFPATFEYM KKSVERTSRW AERCLKAHER 180
  181 PQDQGLFGIV QGGEFEELRR QSAKDLVSMD FPGYAVGGLS VGEPKDIMNR VLEFTTPLLP 240
  241 DNKPRYLMGV GSPDSLIDGA IRGIDMFDCV LPTRIARNGT CMTSEGRLVV KNAKFARDFG 300
  301 PLDPNCDCYT CKNYSRAYIR HLMKCDETFG IRLTSYHNLH FLLNLMEQVR QAIREDRLGD 360
  361 FREEFFEQYG FNKPNAKNF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	161.0
Match:	1ozmA
Description:	Y106F mutant of Z. mobilis TGT
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
queuine tRNA-ribosyltransferase activity	5.68673071384353	bayes_pls_golite062009
transferase activity	3.21194535271238	bayes_pls_golite062009
transferase activity, transferring pentosyl groups	2.84864811414771	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	2.53039738178366	bayes_pls_golite062009
catalytic activity	2.02168745464921	bayes_pls_golite062009
binding	1.29132603807317	bayes_pls_golite062009
protein binding	0.136438951368546	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: