YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30264628, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	463 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264628, gi|....

Description	E-value	Query Range	Subject Range
SYN_BACC1 - Asparagine--tRNA ligase OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=asnS PE=3 SV=1	0.0	[1..463]	[1..463]
SYN_BACHK - Asparaginyl-tRNA synthetase OS=Bacillus thuringiensis subsp. konkukian GN=asnS PE=3 SV=1 SYN_BACHK - Asparagine--tRNA ligase OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=asnS PE=3 SV=1 gi\|229186812, gi... - gi\|229186812\|ref\|ZP_04313967.1\| Asparaginyl-tRNA synthetase [Bacillus cereus BGSC 6E1], gi\|228596549... gi\|162382772 - gi\|162382772\|ref\|YP_896857.2\| asparaginyl-tRNA synthetase [Bacillus thuringiensis str. Al Hakam]	0.0	[1..463]	[1..463]
SYN_CLOTE - Asparagine--tRNA ligase OS=Clostridium tetani (strain Massachusetts / E88) GN=asnS PE=3 SV=1 SYN_CLOTE - Asparagine--tRNA ligase OS=Clostridium tetani GN=asnS PE=3 SV=1	0.0	[1..463]	[1..463]
gi\|229129842, gi... - gi\|229129842\|ref\|ZP_04258808.1\| Asparaginyl-tRNA synthetase [Bacillus cereus BDRD-Cer4], gi\|22865353... SYN_BACCR - Asparagine--tRNA ligase OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCI... gi\|206969927, gi... - gi\|206969927\|ref\|ZP_03230881.1\| asparaginyl-tRNA synthetase [Bacillus cereus AH1134], gi\|206735615\|g... gi\|228636366, gi... - gi\|229147117\|ref\|ZP_04275476.1\| Asparaginyl-tRNA synthetase [Bacillus cereus BDRD-ST24], gi\|22863636... gi\|229072060, gi... - gi\|229072060\|ref\|ZP_04205269.1\| Asparaginyl-tRNA synthetase [Bacillus cereus F65185], gi\|228710994\|g... gi\|229081811, gi... - gi\|229081811\|ref\|ZP_04214303.1\| Asparaginyl-tRNA synthetase [Bacillus cereus Rock4-2], gi\|228701399\|... gi\|229180877, gi... - gi\|229180877\|ref\|ZP_04308212.1\| Asparaginyl-tRNA synthetase [Bacillus cereus 172560W], gi\|228602434\|... gi\|229192759, gi... - gi\|229192759\|ref\|ZP_04319717.1\| Asparaginyl-tRNA synthetase [Bacillus cereus ATCC 10876], gi\|2285905... gi\|228798849, gi... - gi\|228960827\|ref\|ZP_04122462.1\| Asparaginyl-tRNA synthetase [Bacillus thuringiensis serovar pakistan... gi\|229048266, gi... - gi\|229048266\|ref\|ZP_04193834.1\| Asparaginyl-tRNA synthetase [Bacillus cereus AH676], gi\|228722991\|gb... gi\|228836256, gi... - gi\|228923302\|ref\|ZP_04086590.1\| Asparaginyl-tRNA synthetase [Bacillus thuringiensis serovar huazhong... gi\|228804816, gi... - gi\|228954827\|ref\|ZP_04116847.1\| Asparaginyl-tRNA synthetase [Bacillus thuringiensis serovar kurstaki...	0.0	[1..463]	[1..463]
gi\|163942293, gi... - gi\|89205343\|ref\|ZP_01183914.1\| Asparaginyl-tRNA synthetase, class IIb [Bacillus weihenstephanensis K...	0.0	[1..463]	[1..463]
SYN_BACCN - Asparagine--tRNA ligase OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-98...	0.0	[1..463]	[1..463]
SYN_CLOTH - Asparagine--tRNA ligase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 / NC... gi\|196199316, gi... - gi\|196251353\|ref\|ZP_03150023.1\| asparaginyl-tRNA synthetase [Clostridium thermocellum DSM 4150], gi\|...	0.0	[1..463]	[1..464]
gi\|39575142, gi\|... - gi\|42522610\|ref\|NP_967990.1\| asparaginyl-tRNA synthetase [Bdellovibrio bacteriovorus HD100], gi\|3957...	0.0	[1..463]	[52..514]
SYN_CYTH3 - Asparagine--tRNA ligase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=asnS PE=3 SV=1	0.0	[1..463]	[1..464]
gi\|160426922, gi... - gi\|160878256\|ref\|YP_001557224.1\| asparaginyl-tRNA synthetase [Clostridium phytofermentans ISDg], gi\|...	0.0	[1..462]	[10..471]

Back

Predicted Domain #1

Region A:
Residues: [1-463]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENTLVKSLY RDTDKYAGQT VQVSGWIRNL RDSKAFGFIE LNDGSFFKSV QIVFDTELDN  60
   61 FKEIAKLPLS SSVKVEGKVI ATPGAKQPFE IKAEKIDIEG LSDSDYPLQK KRHTFEYLRT 120
  121 IAHLRPRTNA FSATFRVRSI AAFAIHQFFQ ERGFVHVHTP IITGSDTEGA GEMFRVTTQD 180
  181 LNNVPKGEDG QVDESKDFFG KETNLTVSGQ LNAEAYALAF RDVYTFGPTF RAENSNTTRH 240
  241 AAEFWMVEPE IAFAELGDVM NLTEDMLKYA MKYVLEHAPE EMEFFNSFVD KTVLERMNNV 300
  301 INSDFGRITY TEAIKVLQES GADFKYPVEW GIDLQTEHER YLSEEIFKRP VFVTDYPKDI 360
  361 KAFYMRLNDD GKTVAATDLL VPGIGELIGG SQREERMDVL VDRIKELGMN EEDYWWYLEL 420
  421 RKYGGTKHAG FGLGFERFLM YITGMANIRD VIPFPRTPGS SEF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	110.0
Match:	1x54A
Description:	No description for 1x54A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits