YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30264669, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	585 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264669, gi|....

Description	E-value	Query Range	Subject Range
gi\|89201574, gi\|... - gi\|89201574\|ref\|ZP_01180312.1\| Pyruvate kinase [Bacillus cereus subsp. cytotoxis NVH 391-98], gi\|891...	0.0	[1..585]	[1..585]
gi\|30022674, gi\|... - gi\|30022674\|ref\|NP_834305.1\| pyruvate kinase [Bacillus cereus ATCC 14579], gi\|29898233\|gb\|AAP11506.1... gi\|218162789, gi... - gi\|218234832\|ref\|YP_002369394.1\| pyruvate kinase [Bacillus cereus B4264], gi\|218162789\|gb\|ACK62781.1... gi\|229081850, gi... - gi\|229081850\|ref\|ZP_04214342.1\| Pyruvate kinase [Bacillus cereus Rock4-2], gi\|228701438\|gb\|EEL53932.... gi\|228723030, gi... - gi\|229048305\|ref\|ZP_04193873.1\| Pyruvate kinase [Bacillus cereus AH676], gi\|228723030\|gb\|EEL74407.1\|... gi\|228960866, gi... - gi\|228960866\|ref\|ZP_04122499.1\| Pyruvate kinase [Bacillus thuringiensis serovar pakistani str. T1300... gi\|206969429, gi... - gi\|206969429\|ref\|ZP_03230383.1\| pyruvate kinase [Bacillus cereus AH1134], gi\|206735117\|gb\|EDZ52285.1... gi\|229152793, gi... - gi\|229152793\|ref\|ZP_04280976.1\| Pyruvate kinase [Bacillus cereus m1550], gi\|228630613\|gb\|EEK87259.1\|... gi\|228636268, gi... - gi\|229147158\|ref\|ZP_04275516.1\| Pyruvate kinase [Bacillus cereus BDRD-ST24], gi\|228636268\|gb\|EEK9274... gi\|229129882, gi... - gi\|229129882\|ref\|ZP_04258848.1\| Pyruvate kinase [Bacillus cereus BDRD-Cer4], gi\|228653573\|gb\|EEL0944... gi\|228671387, gi... - gi\|229112064\|ref\|ZP_04241607.1\| Pyruvate kinase [Bacillus cereus Rock1-15], gi\|228671387\|gb\|EEL26688... gi\|229192799, gi... - gi\|229192799\|ref\|ZP_04319757.1\| Pyruvate kinase [Bacillus cereus ATCC 10876], gi\|228590638\|gb\|EEK484... gi\|228602474, gi... - gi\|229180917\|ref\|ZP_04308252.1\| Pyruvate kinase [Bacillus cereus 172560W], gi\|228602474\|gb\|EEK59960....	0.0	[1..585]	[1..585]
gi\|221242118, gi... - gi\|222098060\|ref\|YP_002532117.1\| pyruvate kinase [Bacillus cereus Q1], gi\|221242118\|gb\|ACM14828.1\| p... gi\|206977186, gi... - gi\|206977186\|ref\|ZP_03238085.1\| pyruvate kinase [Bacillus cereus H3081.97], gi\|206744671\|gb\|EDZ56079... gi\|228584682, gi... - gi\|229198749\|ref\|ZP_04325445.1\| Pyruvate kinase [Bacillus cereus m1293], gi\|228584682\|gb\|EEK42804.1\|... gi\|42739705, gi\|... - gi\|42783775\|ref\|NP_981022.1\| pyruvate kinase [Bacillus cereus ATCC 10987], gi\|42739705\|gb\|AAS43630.1...	0.0	[1..585]	[1..585]
gi\|228647994, gi... - gi\|229135433\|ref\|ZP_04264220.1\| Pyruvate kinase [Bacillus cereus BDRD-ST196], gi\|228647994\|gb\|EEL040... gi\|229013803, gi... - gi\|229013803\|ref\|ZP_04170931.1\| Pyruvate kinase [Bacillus mycoides DSM 2048], gi\|228747472\|gb\|EEL973... gi\|229169325, gi... - gi\|229169325\|ref\|ZP_04297035.1\| Pyruvate kinase [Bacillus cereus AH621], gi\|228614088\|gb\|EEK71203.1\|... gi\|163942331, gi... - gi\|89207586\|ref\|ZP_01186124.1\| Pyruvate kinase [Bacillus weihenstephanensis KBAB4], gi\|89154480\|gb\|E...	0.0	[1..585]	[1..585]
KPYK_GEOSE - Pyruvate kinase OS=Geobacillus stearothermophilus GN=pyk PE=1 SV=2	0.0	[2..585]	[3..587]
gi\|56910726, gi\|... - gi\|56964483\|ref\|YP_176214.1\| pyruvate kinase [Bacillus clausii KSM-K16], gi\|56910726\|dbj\|BAD65253.1\|...	0.0	[1..585]	[1..584]
gi\|25287750 - pir\|\|C84045 pyruvate kinase pykA [imported] - Bacillus halodurans (strain C-125) gi\|15615725, gi\|... - gi\|15615725\|ref\|NP_244029.1\| pyruvate kinase [Bacillus halodurans C-125], gi\|10175785\|dbj\|BAB06882.1...	0.0	[1..585]	[1..584]
gi\|56421274, gi\|... - gi\|56421274\|ref\|YP_148592.1\| pyruvate kinase [Geobacillus kaustophilus HTA426], gi\|56381116\|dbj\|BAD7...	0.0	[2..585]	[3..587]
gi\|89084893, gi\|... - gi\|89100374\|ref\|ZP_01173238.1\| pyruvate kinase [Bacillus sp. NRRL B-14911], gi\|89084893\|gb\|EAR64030....	0.0	[1..585]	[1..586]
gi\|254479698, gi... - gi\|254479698\|ref\|ZP_05092992.1\| pyruvate kinase [Carboxydibrachium pacificum DSM 12653], gi\|22348849... gi\|20808232 - gi\|20808232\|ref\|NP_623403.1\| Pyruvate kinase [Thermoanaerobacter tengcongensis MB4] gi\|20808232, gi\|... - gi\|20808232\|ref\|NP_623403.1\| pyruvate kinase [Thermoanaerobacter tengcongensis MB4], gi\|20516829\|gb\|...	0.0	[1..580]	[1..578]

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Predicted Domain #1

Region A:
Residues: [1-474]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKTKIVCTI GPASESIEKL EQLIEAGMNV ARLNFSHGSH EEHGARIKNI REASKKTGKT  60
   61 VGILLDTKGP EIRTHDFVDG QAELVTGAEV VLSTEQVLGT AEKFSVSYAG LYDDVDPGSR 120
  121 ILIDDGLIEL EVIEKADGNI RTKVLNSGTV KNKKGVNVPN VSIKLPGITE KDVKDIIFGI 180
  181 EQKVDFIAAS FVRKAADVLE IRELLEEHNA QYIQIVPKIE NQEGIDNIDS ILEVSDGLMV 240
  241 ARGDMGVEIP PEEVPLVQKR LIKKCNVLGK PVITATQMLD SMQRNPRPTR AEASDVANAI 300
  301 FDGTDAIMLS GETAAGQYPV EAVTMMANIA VRVEKSLQYE DMFKKRIKEF TPTITDAISQ 360
  361 SVAHTALALD VAAIVAPTES GYTAKMISKY RPKSPIVAVT SDEQVGRRLA LVWGVQAFMA 420
  421 EKRAASTDEM LDTAIQTGMD AGLIGLGDTV VITAGVPVAE TGTTNLMKIH VVGE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	158.0
Match:	1zjhA
Description:	Structure of human muscle pyruvate kinase (PKM2)
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [475-585]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EVAKGQGIGR KAAKGKVVVA KTAAEAVANV NEGDILVTTS TDKDMIPAIE KAAALVVEEG  60
   61 GLTSHAAVVG VSIGIPVIVG VNGVTATLKN GQEVTVDAAR GIVYNGHAEV L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	64.522879
Match:	1vbgA
Description:	Pyruvate Phosphate Dikinase from Maize
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
kinase activity	2.13607231450047	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	1.87798675682048	bayes_pls_golite062009
transferase activity	1.29715060769549	bayes_pls_golite062009
phosphotransferase activity, paired acceptors	0.835626082745622	bayes_pls_golite062009
catalytic activity	0.60409960326459	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: