YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30264759, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	436 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264759, gi|....

Description	E-value	Query Range	Subject Range
gi\|229141422, gi... - gi\|229141422\|ref\|ZP_04269960.1\| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BDRD-ST26], ... gi\|228625256, gi... - gi\|229158298\|ref\|ZP_04286365.1\| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus ATCC 4342], ... gi\|228771806, gi... - gi\|228987941\|ref\|ZP_04148048.1\| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis serov... MURC_BACC7 - UDP-N-acetylmuramate--L-alanine ligase OS=Bacillus cereus (strain AH187) GN=murC PE=3 SV=1 gi\|206978123, gi... - gi\|206978123\|ref\|ZP_03239006.1\| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus H3081.97], gi\|... gi\|229198852, gi... - gi\|229198852\|ref\|ZP_04325544.1\| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus m1293], gi\|2... MURC_BACC1 - UDP-N-acetylmuramate--L-alanine ligase OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=murC PE=3... MURC_BACHK - UDP-N-acetylmuramate--L-alanine ligase OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=... MURC_BACHK - UDP-N-acetylmuramate--L-alanine ligase OS=Bacillus thuringiensis subsp. konkukian GN=murC PE=3 SV=1	9.0E-95	[1..436]	[1..436]
gi\|228716941, gi... - gi\|229062372\|ref\|ZP_04199689.1\| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH603], gi\|2... gi\|228747562, gi... - gi\|229013893\|ref\|ZP_04171021.1\| UDP-N-acetylmuramate--L-alanine ligase [Bacillus mycoides DSM 2048],... gi\|229169419, gi... - gi\|229169419\|ref\|ZP_04297128.1\| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH621], gi\|2... gi\|228647948, gi... - gi\|229135527\|ref\|ZP_04264312.1\| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BDRD-ST196],... MURC_BACWK - UDP-N-acetylmuramate--L-alanine ligase OS=Bacillus weihenstephanensis (strain KBAB4) GN=murC PE=3 SV...	1.0E-94	[1..436]	[1..436]
gi\|229181005, gi... - gi\|229181005\|ref\|ZP_04308340.1\| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus 172560W], gi... gi\|229194183, gi... - gi\|229194183\|ref\|ZP_04321039.1\| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus ATCC 10876],... MURC_BACCR - UDP-N-acetylmuramate--L-alanine ligase OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / N... gi\|228910543, gi... - gi\|228910543\|ref\|ZP_04074357.1\| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis IBL 2... gi\|228954966, gi... - gi\|228954966\|ref\|ZP_04116983.1\| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis serov... MURC_BACC4 - UDP-N-acetylmuramate--L-alanine ligase OS=Bacillus cereus (strain B4264) GN=murC PE=3 SV=1 gi\|206969750, gi... - gi\|206969750\|ref\|ZP_03230704.1\| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus AH1134], gi\|20... gi\|229072191, gi... - gi\|229072191\|ref\|ZP_04205399.1\| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus F65185], gi\|... gi\|229081944, gi... - gi\|229081944\|ref\|ZP_04214436.1\| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock4-2], gi... gi\|228798739, gi... - gi\|228960959\|ref\|ZP_04122591.1\| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis serov... gi\|228723120, gi... - gi\|229048395\|ref\|ZP_04193963.1\| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus AH676], gi\|2... gi\|228636212, gi... - gi\|229147254\|ref\|ZP_04275609.1\| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BDRD-ST24], ... gi\|228630707, gi... - gi\|229152887\|ref\|ZP_04281070.1\| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus m1550], gi\|2... gi\|228671267, gi... - gi\|229112151\|ref\|ZP_04241693.1\| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus Rock1-15], g... gi\|228653492, gi... - gi\|229129967\|ref\|ZP_04258932.1\| UDP-N-acetylmuramate--L-alanine ligase [Bacillus cereus BDRD-Cer4], ...	1.0E-94	[1..436]	[1..436]
MURC_BACSU - UDP-N-acetylmuramate--L-alanine ligase OS=Bacillus subtilis GN=murC PE=3 SV=2 gi\|221315250 - gi\|221315250\|ref\|ZP_03597055.1\| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis subsp. sub... MURC_BACSU - UDP-N-acetylmuramate--L-alanine ligase OS=Bacillus subtilis (strain 168) GN=murC PE=3 SV=2 gi\|221320167 - gi\|221320167\|ref\|ZP_03601461.1\| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis subsp. sub... gi\|221324448 - gi\|221324448\|ref\|ZP_03605742.1\| UDP-N-acetylmuramate--L-alanine ligase [Bacillus subtilis subsp. sub...	1.0E-94	[1..428]	[1..428]
gi\|47565112, gi\|... - gi\|47565112\|ref\|ZP_00236155.1\| UDP-N-acetylmuramate--alanine ligase [Bacillus cereus G9241], gi\|4755...	2.0E-94	[1..436]	[1..436]
gi\|228784924, gi... - gi\|228974796\|ref\|ZP_04135361.1\| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis serov... gi\|228791943, gi... - gi\|228967789\|ref\|ZP_04128805.1\| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis serov... gi\|228778590, gi... - gi\|228981390\|ref\|ZP_04141690.1\| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis Bt407... gi\|75760821, gi\|... - gi\|75760821\|ref\|ZP_00740837.1\| UDP-N-acetylmuramate--alanine ligase [Bacillus thuringiensis serovar ... MURC_BACC2 - UDP-N-acetylmuramate--L-alanine ligase OS=Bacillus cereus (strain G9842) GN=murC PE=3 SV=1 gi\|228817804, gi... - gi\|228941870\|ref\|ZP_04104416.1\| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis serov... gi\|228903207, gi... - gi\|228903207\|ref\|ZP_04067341.1\| UDP-N-acetylmuramate--L-alanine ligase [Bacillus thuringiensis IBL 4...	2.0E-94	[1..436]	[1..436]
gi\|220706559, gi... - gi\|221089493\|ref\|ZP_03559010.1\| UDP-N-acetylmuramate/alanine ligase [Geobacillus sp. Y412MC61], gi\|2... MURC_GEOKA - UDP-N-acetylmuramate--L-alanine ligase OS=Geobacillus kaustophilus (strain HTA426) GN=murC PE=3 SV=1 MURC_GEOKA - UDP-N-acetylmuramate--L-alanine ligase OS=Geobacillus kaustophilus GN=murC PE=3 SV=1 gi\|229329068, gi... - gi\|229500073\|ref\|ZP_04393747.1\| UDP-N-acetylmuramate/alanine ligase [Geobacillus sp. Y412MC52], gi\|2...	6.0E-94	[1..428]	[1..428]
gi\|52004691, gi\|... - gi\|52081480\|ref\|YP_080271.1\| UDP-N-acetylmuramate--L-alanine ligase [Bacillus licheniformis ATCC 145...	1.0E-93	[1..428]	[1..428]
MURC_BACHD - UDP-N-acetylmuramate--L-alanine ligase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FER... MURC_BACHD - UDP-N-acetylmuramate--L-alanine ligase OS=Bacillus halodurans GN=murC PE=3 SV=1	1.0E-93	[1..431]	[1..431]

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Predicted Domain #1

Region A:
Residues: [1-436]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVYHFVGIK GTGMSSLAQI LHDMKHTVQG SDYEKRFFTQ TALEKRNISI LPFDKSNVKE  60
   61 GQVIIAGNAF PDTHEEIVAA KELNIPVHRY HHFLGDLMNQ YTSVAVTGAH GKTSTTGLLA 120
  121 HVMQGAHPTS YLIGDGTGHG VENSKYFVFE ACEYRRHFLS YNPDYAIMTN IDFDHPDYFT 180
  181 DINDVFSAFQ EMALQVKKGI IACGDDEELQ KIQAKVPVIF YGFGEDNDFQ ARNIQKRTDG 240
  241 TIFDVFVRNT YYDTFKITGY GNHSVLNALA VIALCHYENV DVEAVKHQLT TFEGVKRRFN 300
  301 EKPMGEQVII DDYAHHPTEI NATIEAARQK HPEREIVAVF QPHTFSRTEK FLDEFAESLS 360
  361 KADQVYLCDI FGSARENKGE LTIEDLQKRI DGAELITDTT TDVLKKHKNG VLIFMGAGDI 420
  421 QKFEAAYVKE VQVAEK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	81.09691
Match:	1gqqA
Description:	UDP-N-acetylmuramate-alanine ligase MurC
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
acid-amino acid ligase activity	4.86493054281191	bayes_pls_golite062009
catalytic activity	3.03081854683329	bayes_pls_golite062009
UDP-N-acetylmuramate-L-alanine ligase activity	2.62956763198067	bayes_pls_golite062009
UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase activity	2.38541436302257	bayes_pls_golite062009
ligase activity	2.2556848409907	bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds	2.19206014001612	bayes_pls_golite062009
UDP-N-acetylmuramoylalanine-D-glutamate ligase activity	1.471039191151	bayes_pls_golite062009
UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity	1.15437935952018	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: