YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259438, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	204 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259438, gi|....

Description	E-value	Query Range	Subject Range
gi\|196040924, gi... - gi\|196040924\|ref\|ZP_03108222.1\| putative tRNA binding domain protein [Bacillus cereus NVH0597-99], g... gi\|42783880, gi\|... - gi\|42783880\|ref\|NP_981127.1\| tRNA-binding domain-containing protein [Bacillus cereus ATCC 10987], gi...	3.0E-56	[1..204]	[1..204]
gi\|47557903, gi\|... - gi\|47565117\|ref\|ZP_00236160.1\| tRNA binding domain protein [Bacillus cereus G9241], gi\|47557903\|gb\|E...	1.0E-55	[1..204]	[1..204]
gi\|30022764, gi\|... - gi\|30022764\|ref\|NP_834395.1\| tRNA-binding domain-containing protein [Bacillus cereus ATCC 14579], gi... gi\|229048401, gi... - gi\|229048401\|ref\|ZP_04193968.1\| hypothetical protein bcere0027_43680 [Bacillus cereus AH676], gi\|228... gi\|228960966, gi... - gi\|228960966\|ref\|ZP_04122596.1\| hypothetical protein bthur0005_44190 [Bacillus thuringiensis serovar... gi\|229147262, gi... - gi\|229147262\|ref\|ZP_04275614.1\| hypothetical protein bcere0012_43940 [Bacillus cereus BDRD-ST24], gi... gi\|229129973, gi... - gi\|229129973\|ref\|ZP_04258937.1\| hypothetical protein bcere0015_44130 [Bacillus cereus BDRD-Cer4], gi... gi\|229112156, gi... - gi\|229112156\|ref\|ZP_04241698.1\| hypothetical protein bcere0018_43990 [Bacillus cereus Rock1-15], gi\|...	3.0E-55	[4..204]	[1..201]
gi\|116106900, gi... - gi\|62463050\|ref\|ZP_00382405.1\| COG0073: EMAP domain [Lactococcus lactis subsp. cremoris SK11], gi\|11...	9.0E-55	[4..203]	[1..201]
gi\|152977046, gi... - gi\|89201321\|ref\|ZP_01180066.1\| tRNA-binding region [Bacillus cereus subsp. cytotoxis NVH 391-98], gi...	3.0E-54	[4..204]	[1..201]
gi\|229169425, gi... - gi\|229169425\|ref\|ZP_04297133.1\| hypothetical protein bcere0007_43750 [Bacillus cereus AH621], gi\|228... gi\|229062378, gi... - gi\|229062378\|ref\|ZP_04199694.1\| hypothetical protein bcere0026_44470 [Bacillus cereus AH603], gi\|228... gi\|163864620, gi... - gi\|89204188\|ref\|ZP_01182766.1\| t-RNA-binding region [Bacillus weihenstephanensis KBAB4], gi\|89157761...	6.0E-54	[4..204]	[1..201]
gi\|50590399, gi\|... - gi\|81176905\|ref\|ZP_00875867.1\| t-RNA-binding region [Streptococcus suis 89/1591], gi\|80976347\|gb\|EAP...	8.0E-54	[4..203]	[1..200]
gi\|46907838, gi\|... - gi\|46907838\|ref\|YP_014227.1\| tRNA-binding domain-containing protein [Listeria monocytogenes str. 4b ...	1.0E-53	[4..202]	[3..201]
gi\|47094077, gi\|... - gi\|47094077\|ref\|ZP_00231804.1\| tRNA-binding domain protein [Listeria monocytogenes str. 4b H7858], g... gi\|133735298, gi... - gi\|254931546\|ref\|ZP_05264905.1\| phenylalanyl-tRNA synthetase (beta subunit) [Listeria monocytogenes ... gi\|153167190, gi... - gi\|153167190\|ref\|ZP_01927471.1\| tRNA-binding domain protein [Listeria monocytogenes FSL N1-017], gi\|... gi\|254852229 - gi\|254852229\|ref\|ZP_05241577.1\| phenylalanyl-tRNA synthetase (beta subunit) [Listeria monocytogenes ... gi\|226224208, gi... - gi\|226224208\|ref\|YP_002758315.1\| phenylalanyl-tRNA synthetase (beta subunit) [Listeria monocytogenes... gi\|254994007 - gi\|254994007\|ref\|ZP_05276197.1\| phenylalanyl-tRNA synthetase (beta subunit) [Listeria monocytogenes ... gi\|254880294 - gi\|254880294\|ref\|ZP_05253004.1\| phenylalanyl-tRNA synthetase (beta subunit) [Listeria monocytogenes ...	2.0E-53	[4..202]	[3..201]
gi\|15672372, gi\|... - gi\|15672372\|ref\|NP_266546.1\| hypothetical protein L195751 [Lactococcus lactis subsp. lactis Il1403],... gi\|25305322 - pir\|\|F86673 hypothetical protein ydjD [imported] - Lactococcus lactis subsp. lactis (strain IL1403)	7.0E-53	[4..203]	[1..201]

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Predicted Domain #1

Region A:
Residues: [1-204]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEVNVFYNL EGIGDTLIVA LQDITLENRT FDRKGDVARV YDRESNETAG FNIFNASSYL  60
   61 EVKETGNLTL TKELVEKINE ILAKNGFEET VEADLSPKFV VGYVAEKEKH PNADKLNICK 120
  121 VEIGTETLQI VCGAPNVDAG QKVVVAKIGA VMPSGMLIKP AELRGVPSAG MICSARELEL 180
  181 PDAPQEKGIL VLEDSFEVGQ EFKF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.69897
Match:	1rqgA
Description:	Methionyl-tRNA synthetase from Pyrococcus abyssi
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits