YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30264834, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	399 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264834, gi|....

Description	E-value	Query Range	Subject Range
METK_GEOKA - S-adenosylmethionine synthase OS=Geobacillus kaustophilus (strain HTA426) GN=metK PE=3 SV=1 METK_GEOKA - S-adenosylmethionine synthase OS=Geobacillus kaustophilus GN=metK PE=3 SV=1	0.0	[1..397]	[1..397]
METK_BACLD - S-adenosylmethionine synthase OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / NBR...	0.0	[1..397]	[1..397]
METK_BACCN - S-adenosylmethionine synthase OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH ...	0.0	[1..399]	[1..399]
gi\|89099667, gi\|... - gi\|89099667\|ref\|ZP_01172541.1\| S-adenosylmethionine synthetase [Bacillus sp. NRRL B-14911], gi\|89085...	0.0	[1..398]	[1..398]
gi\|228988025, gi... - gi\|228988025\|ref\|ZP_04148127.1\| S-adenosylmethionine synthetase [Bacillus thuringiensis serovar toch... METK_BACHK - S-adenosylmethionine synthase OS=Bacillus thuringiensis subsp. konkukian GN=metK PE=3 SV=1 METK_BACC7 - S-adenosylmethionine synthase OS=Bacillus cereus (strain AH187) GN=metK PE=3 SV=1 gi\|228641954, gi... - gi\|229141504\|ref\|ZP_04270039.1\| S-adenosylmethionine synthetase [Bacillus cereus BDRD-ST26], gi\|2286... METK_BACHK - S-adenosylmethionine synthase OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=metK PE=3...	0.0	[1..399]	[1..399]
gi\|221315322 - gi\|221315322\|ref\|ZP_03597127.1\| S-adenosylmethionine synthetase [Bacillus subtilis subsp. subtilis s... METK_BACSU - S-adenosylmethionine synthase OS=Bacillus subtilis GN=metK PE=3 SV=2 gi\|221320239 - gi\|221320239\|ref\|ZP_03601533.1\| S-adenosylmethionine synthetase [Bacillus subtilis subsp. subtilis s... gi\|221324521 - gi\|221324521\|ref\|ZP_03605815.1\| S-adenosylmethionine synthetase [Bacillus subtilis subsp. subtilis s... METK_BACSU - S-adenosylmethionine synthase OS=Bacillus subtilis (strain 168) GN=metK PE=3 SV=2	0.0	[1..397]	[1..397]
gi\|229072270, gi... - gi\|229072270\|ref\|ZP_04205475.1\| S-adenosylmethionine synthetase [Bacillus cereus F65185], gi\|2287108... gi\|229048467, gi... - gi\|229048467\|ref\|ZP_04194031.1\| S-adenosylmethionine synthetase [Bacillus cereus AH676], gi\|22872287... gi\|228653405, gi... - gi\|229130044\|ref\|ZP_04259007.1\| S-adenosylmethionine synthetase [Bacillus cereus BDRD-Cer4], gi\|2286... gi\|228671212, gi... - gi\|229112228\|ref\|ZP_04241768.1\| S-adenosylmethionine synthetase [Bacillus cereus Rock1-15], gi\|22867... gi\|206969934, gi... - gi\|206969934\|ref\|ZP_03230888.1\| S-adenosylmethionine synthetase [Bacillus cereus AH1134], gi\|2067356... gi\|229158381, gi... - gi\|229158381\|ref\|ZP_04286444.1\| S-adenosylmethionine synthetase [Bacillus cereus ATCC 4342], gi\|2286... METK_BACC4 - S-adenosylmethionine synthase OS=Bacillus cereus (strain B4264) GN=metK PE=3 SV=1 gi\|228636018, gi... - gi\|229147336\|ref\|ZP_04275685.1\| S-adenosylmethionine synthetase [Bacillus cereus BDRD-ST24], gi\|2286... METK_BACCR - S-adenosylmethionine synthase OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305... gi\|228590317, gi... - gi\|229193053\|ref\|ZP_04320008.1\| S-adenosylmethionine synthetase [Bacillus cereus ATCC 10876], gi\|228... gi\|228602281, gi... - gi\|229181090\|ref\|ZP_04308422.1\| S-adenosylmethionine synthetase [Bacillus cereus 172560W], gi\|228602... gi\|47557980, gi\|... - gi\|47565194\|ref\|ZP_00236237.1\| S-adenosylmethionine synthetase [Bacillus cereus G9241], gi\|47557980\|...	0.0	[1..399]	[1..399]
gi\|228584543, gi... - gi\|229198929\|ref\|ZP_04325618.1\| S-adenosylmethionine synthetase [Bacillus cereus m1293], gi\|22858454... METK_BACC1 - S-adenosylmethionine synthase OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=metK PE=3 SV=1 gi\|228923522, gi... - gi\|228923522\|ref\|ZP_04086803.1\| S-adenosylmethionine synthetase [Bacillus thuringiensis serovar huaz...	0.0	[1..399]	[1..399]
gi\|229062458, gi... - gi\|229062458\|ref\|ZP_04199772.1\| S-adenosylmethionine synthetase [Bacillus cereus AH603], gi\|22871682... gi\|229169504, gi... - gi\|229169504\|ref\|ZP_04297208.1\| S-adenosylmethionine synthetase [Bacillus cereus AH621], gi\|22861389... gi\|229135609, gi... - gi\|229135609\|ref\|ZP_04264388.1\| S-adenosylmethionine synthetase [Bacillus cereus BDRD-ST196], gi\|228... METK_BACWK - S-adenosylmethionine synthase OS=Bacillus weihenstephanensis (strain KBAB4) GN=metK PE=3 SV=1	0.0	[1..399]	[1..399]
gi\|108744027 - gi\|108744027\|gb\|ABG02285.1\| S-adenosylmethionine synthetase [Bacillus thuringiensis]	0.0	[1..399]	[1..399]

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Predicted Domain #1

Region A:
Residues: [1-399]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKKRHLFTS ESVTEGHPDK ICDQISDSIL DAILSKDANA RVACETTVTT GLVLVAGEIT  60
   61 TSTYVDIPKI VRETIQGIGY TRAKYGFDAE TCAVLTSIDE QSADIAMGVD QALEAREGQM 120
  121 TDAEIEAIGA GDQGLMFGFA CNETQELMPL PISLAHKLAR RLTEVRKNDT LSYLRPDGKT 180
  181 QVTVEYDENG KPVRVDTIVI STQHHPDVTW EEIDRDLKEH VIKAVVPAEL IDGETKFFIN 240
  241 PTGRFVIGGP QGDAGLTGRK IIVDTYGGYA RHGGGAFSGK DATKVDRSAA YAARYVAKNI 300
  301 VAAGLAEKAE VQLAYAIGVA QPVSISVDTF GTGKVSEDVL VELVRNNFDL RPAGIIKMLD 360
  361 LRRPIYKQTA AYGHFGRTDV DLSWERTDKA AALKEQAGL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1fugA
Description:	S-adenosylmethionine synthetase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
methionine adenosyltransferase activity	8.00759843092519	bayes_pls_golite062009
transferase activity	1.78879119839291	bayes_pls_golite062009
binding	1.70779292877479	bayes_pls_golite062009
catalytic activity	1.59111295908728	bayes_pls_golite062009
transferase activity, transferring alkyl or aryl (other than methyl) groups	1.11999094477144	bayes_pls_golite062009
protein binding	0.298204436433395	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: