YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259573, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	256 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259573, gi|....

Description	E-value	Query Range	Subject Range
gi\|7442503 - pir\|\|H71241 probable multiple sugar-binding transport ATP-binding protein - Pyrococcus horikoshii gi\|3256580, gi\|1... - gi\|3256580\|dbj\|BAA29263.1\| 375aa long hypothetical multiple sugar-binding transport ATP-binding prot...	2.0E-86	[1..253]	[1..252]
gi\|119720457, gi... - gi\|119720457\|ref\|YP_920952.1\| spermidine/putrescine ABC transporter ATPase subunit [Thermofilum pend...	2.0E-86	[3..256]	[2..248]
gi\|48835579 - ref\|ZP_00292578.1\| COG3842: ABC-type spermidine/putrescine transport systems, ATPase components [The... POTA_THEFY - Spermidine/putrescine import ATP-binding protein PotA OS=Thermobifida fusca (strain YX) GN=potA PE=3...	1.0E-85	[3..245]	[24..261]
gi\|18894131, gi\|... - gi\|18978305\|ref\|NP_579662.1\| putative sugar transport ATP-hydrolyzing [Pyrococcus furiosus DSM 3638]...	2.0E-85	[5..253]	[4..249]
gi\|221236171, gi... - gi\|221236171\|ref\|YP_002518608.1\| spermidine/putrescine transport ATP-binding protein potA [Caulobact... gi\|25384753 - pir\|\|D87637 hypothetical protein CC3134 [imported] - Caulobacter crescentus gi\|16127364, gi\|... - gi\|16127364\|ref\|NP_421928.1\| spermidine/putrescine ABC transporter, ATP-binding protein [Caulobacter...	3.0E-85	[2..256]	[12..255]
gi\|5457621, gi\|1... - gi\|5457621\|emb\|CAB49112.1\| Sugar transport, ABC transporter ATP-binding protein [Pyrococcus abyssi G... gi\|5457621, gi\|7... - pir\|\|A75208 sugar transport ATP-binding protein. PAB2232 - Pyrococcus abyssi (strain Orsay), gi\|5457...	3.0E-85	[5..253]	[4..243]
gi\|15643988, gi\|... - gi\|4981786\|gb\|AAD36307.1\|AE001779_9 sugar ABC transporter, ATP-binding protein [Thermotoga maritima ... gi\|281412971\|ref... - ABC transporter related protein [Thermotoga naphthophila RKU-10] gi\|170289367, gi... - gi\|170289367\|ref\|YP_001739605.1\| ABC transporter related [Thermotoga sp. RQ2], gi\|170176870\|gb\|ACB09... gi\|7442603 - pir\|\|A72279 sugar ABC transporter, ATP-binding protein - Thermotoga maritima (strain MSB8)	9.0E-85	[5..253]	[4..243]
POTA_ACIC1 - Spermidine/putrescine import ATP-binding protein PotA OS=Acidothermus cellulolyticus (strain ATCC 43...	1.0E-84	[2..245]	[9..247]

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Predicted Domain #1

Region A:
Residues: [1-256]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTVLEAKNI EKVYDTGGNK FAALKGINLQ VKEGEFVGIM GPSGSGKTTL LNVLSTIDNA  60
   61 TNGEILIDGK DIVKMNDDKL ALFRRDHLGF IFQDYNLLDT LTVKENIALP LALSKVKANE 120
  121 IDRRVLEISK KFGIDHILSQ FPYQVSGGQK QRCAASRAIV TNPSMIFGDE PTGALDSKSA 180
  181 TDLLESMKSL NEYDNSTILM VTHDAFAASY CKRVIFIKDG ELYKELHRGE LTRKQFFQQV 240
  241 VDVMSSISGG MADDLI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	73.09691
Match:	1f3oA
Description:	MJ0796
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits