YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259606, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	376 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259606, gi|....

Description	E-value	Query Range	Subject Range
gi\|227868451, gi... - gi\|227903564\|ref\|ZP_04021369.1\| glucose-1-phosphate adenylyltransferase [Lactobacillus acidophilus A... GLGC_LACAC - Glucose-1-phosphate adenylyltransferase OS=Lactobacillus acidophilus (strain ATCC 700396 / NCK56 / N... GLGC_LACAC - Glucose-1-phosphate adenylyltransferase OS=Lactobacillus acidophilus GN=glgC PE=3 SV=1	1.0E-64	[3..373]	[1..375]
GLGC_CLOAB - Glucose-1-phosphate adenylyltransferase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / J... GLGC_CLOAB - Glucose-1-phosphate adenylyltransferase OS=Clostridium acetobutylicum GN=glgC PE=3 SV=1	7.0E-64	[1..375]	[1..371]
GLGC_LACS1 - Glucose-1-phosphate adenylyltransferase OS=Lactobacillus salivarius (strain UCC118) GN=glgC PE=3 SV=... gi\|227865869, gi... - gi\|227892320\|ref\|ZP_04010125.1\| glucose-1-phosphate adenylyltransferase [Lactobacillus salivarius AT...	4.0E-63	[3..373]	[1..374]
GLGC_BACWK - Glucose-1-phosphate adenylyltransferase OS=Bacillus weihenstephanensis (strain KBAB4) GN=glgC PE=3 S...	6.0E-63	[1..376]	[1..376]
GLGC_BACCR - Glucose-1-phosphate adenylyltransferase OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / ...	1.0E-62	[1..376]	[1..376]
gi\|47555350, gi\|... - gi\|47568047\|ref\|ZP_00238753.1\| glucose-1-phosphate adenylyltransferase [Bacillus cereus G9241], gi\|4... GLGC_BACC1 - Glucose-1-phosphate adenylyltransferase OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=glgC PE=...	1.0E-62	[1..376]	[1..376]
GLGC_LACCB - Glucose-1-phosphate adenylyltransferase OS=Lactobacillus casei (strain BL23) GN=glgC PE=3 SV=1 gi\|239629893, gi... - gi\|239629893\|ref\|ZP_04672924.1\| glucose-1-phosphate adenylyltransferase [Lactobacillus paracasei sub... GLGC_LACC3 - Glucose-1-phosphate adenylyltransferase OS=Lactobacillus casei (strain ATCC 334) GN=glgC PE=3 SV=1	2.0E-61	[3..373]	[1..375]
GLGC_LACLA - Glucose-1-phosphate adenylyltransferase OS=Lactococcus lactis subsp. lactis GN=glgC PE=3 SV=1 GLGC_LACLA - Glucose-1-phosphate adenylyltransferase OS=Lactococcus lactis subsp. lactis (strain IL1403) GN=glgC ...	5.0E-61	[3..376]	[1..377]
gi\|77684725, gi\|... - gi\|77684725\|ref\|ZP_00800147.1\| Glucose-1-phosphate adenylyltransferase [Alkaliphilus metalliredigene...	5.0E-61	[3..363]	[1..361]
GLGC_EXIS2 - Glucose-1-phosphate adenylyltransferase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 /...	1.0E-60	[1..372]	[1..375]

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Predicted Domain #1

Region A:
Residues: [1-376]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQKQKCVAM LLAGGKGSRL SALTKNLAKP AVPFGGKYRI IDFTLSNCAN SGIETVGILT  60
   61 QYQPLELHNY IGIGNAWDLD RVSGGVTVLP PYAESSGVKW YTGTASAIYQ NLNYLSQYEP 120
  121 EYVLILSGDH IYKMDYSKML DYHIEKEADV SISVIEVPWD EASRFGIMNT NEEMEIVEFE 180
  181 EKPQFPRSNL ASMGIYIFNW AILKEYLEMD ARNPESSNDF GKDVLPLLLD EGKKLMAYPF 240
  241 EGYWKDVGTV KSLWEANMDL LRDETSLNLN DRDWRIYSVN PNEPPQYIAE KAKVEESLIN 300
  301 EGCVIEGDVK HSVLFQGVTV EEGSMVIDSV VMPGAKIGKN VVIERAIVGS EMVIEDGTII 360
  361 RPEKNVDDVV LIAEGK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.09691
Match:	1yp2A
Description:	Crystal structure of potato tuber ADP-glucose pyrophosphorylase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
mannosyltransferase activity	3.87594044828967	bayes_pls_golite062009
alpha-1,2-mannosyltransferase activity	3.78995004368368	bayes_pls_golite062009
uridylyltransferase activity	3.74072767898515	bayes_pls_golite062009
transferase activity	3.32517438937547	bayes_pls_golite062009
acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity	2.71761183000551	bayes_pls_golite062009
transferase activity, transferring hexosyl groups	2.70047942699289	bayes_pls_golite062009
UTP:glucose-1-phosphate uridylyltransferase activity	2.65167602524122	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	2.51696952719873	bayes_pls_golite062009
UTP-monosaccharide-1-phosphate uridylyltransferase activity	2.46432078102948	bayes_pls_golite062009
UDP-glycosyltransferase activity	2.33861720107822	bayes_pls_golite062009
catalytic activity	1.88676710996045	bayes_pls_golite062009
O-acyltransferase activity	1.56776114186736	bayes_pls_golite062009
nucleotidyltransferase activity	1.50551885980582	bayes_pls_golite062009
acetylgalactosaminyltransferase activity	1.33788133706753	bayes_pls_golite062009
polypeptide N-acetylgalactosaminyltransferase activity	1.10309252319727	bayes_pls_golite062009
cytidylyltransferase activity	0.983416157001861	bayes_pls_golite062009
glycogenin glucosyltransferase activity	0.968757748180341	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	0.897978517422275	bayes_pls_golite062009
UDP-N-acetylglucosamine diphosphorylase activity	0.513376694534047	bayes_pls_golite062009
binding	0.503732110578643	bayes_pls_golite062009
mannose-phosphate guanylyltransferase activity	0.2363835251362	bayes_pls_golite062009
guanylyltransferase activity	0.0539392112504681	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: