YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259656, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	356 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259656, gi|....

Description	E-value	Query Range	Subject Range
gi\|42784122, gi\|... - gi\|42784122\|ref\|NP_981369.1\| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus ATCC 109...	1.0E-59	[1..356]	[1..356]
gi\|30022979, gi\|... - gi\|30022979\|ref\|NP_834610.1\| NADH dehydrogenase [Bacillus cereus ATCC 14579], gi\|29898539\|gb\|AAP1181... gi\|228961190, gi... - gi\|228961190\|ref\|ZP_04122811.1\| NADH dehydrogenase [Bacillus thuringiensis serovar pakistani str. T1... gi\|229147483, gi... - gi\|229147483\|ref\|ZP_04275830.1\| NADH dehydrogenase [Bacillus cereus BDRD-ST24], gi\|228635909\|gb\|EEK9... gi\|229130199, gi... - gi\|229130199\|ref\|ZP_04259158.1\| NADH dehydrogenase [Bacillus cereus BDRD-Cer4], gi\|228653132\|gb\|EEL0... gi\|229112386, gi... - gi\|229112386\|ref\|ZP_04241924.1\| NADH dehydrogenase [Bacillus cereus Rock1-15], gi\|228671034\|gb\|EEL26... gi\|229048632, gi... - gi\|229048632\|ref\|ZP_04194190.1\| NADH dehydrogenase [Bacillus cereus AH676], gi\|228722751\|gb\|EEL74138...	5.0E-58	[1..356]	[1..356]
gi\|228903439, gi... - gi\|228903439\|ref\|ZP_04067566.1\| NADH dehydrogenase [Bacillus thuringiensis IBL 4222], gi\|228856214\|g... gi\|218541994, gi... - gi\|218900089\|ref\|YP_002448500.1\| pyridine nucleotide-disulphide oxidoreductase [Bacillus cereus G984... gi\|75758926, gi\|... - gi\|75758926\|ref\|ZP_00739037.1\| NADH dehydrogenase family [Bacillus thuringiensis serovar israelensis...	9.0E-58	[1..356]	[1..356]
gi\|38105561, gi\|... - gi\|39942982\|ref\|XP_361028.1\| hypothetical protein MG03571.4 [Magnaporthe grisea 70-15], gb\|EAA51976....	4.0E-57	[2..347]	[816..1201]
gi\|78044229, gi\|... - gi\|78044229\|ref\|YP_359567.1\| alpha keto acid dehydrogenase complex, E3 component, lipoamide dehydrog...	5.0E-56	[1..350]	[1..380]
gi\|53754287, gi\|... - gi\|54294455\|ref\|YP_126870.1\| lipoamide dehydrogenase [Legionella pneumophila str. Lens], gi\|53754287...	7.0E-56	[2..350]	[7..390]
gi\|53751199, gi\|... - gi\|54297414\|ref\|YP_123783.1\| lipoamide dehydrogenase [Legionella pneumophila str. Paris], gi\|5375119...	1.0E-55	[2..350]	[7..390]
gi\|52841732, gi\|... - gi\|52841732\|ref\|YP_095531.1\| dihydrolipoamide dehydrogenase [Legionella pneumophila subsp. pneumophi...	2.0E-55	[2..350]	[12..395]
gi\|71062053, gi\|... - gi\|71082940\|ref\|YP_265659.1\| dihydrolipoyl dehydrogenase [Candidatus Pelagibacter ubique HTCC1062], ...	3.0E-55	[5..347]	[8..387]
gi\|91762636, gi\|... - gi\|91762636\|ref\|ZP_01264601.1\| Dihydrolipoyl dehydrogenase [Candidatus Pelagibacter ubique HTCC1002]...	3.0E-55	[5..347]	[8..387]

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Predicted Domain #1

Region A:
Residues: [1-356]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHLVILGGG YGGMRILQRL LPSNQLPDDV QVTLIDKVPY HCFKTEYYAL VAGTISETHI  60
   61 RIPFPEHPRL NIQYGTVTNI DLEEKAVHLD GGEAIQYDDL IIGLGCEDKY HNVPGAKEYT 120
  121 HSLQSIEQTR KTYEQLNSLE PNATVAVVGA GLSGVEVASE LRESRSDLKI YLFDRKDRIL 180
  181 FPYPEKLSRY VEEWFVKHKV TIIRNSNITK VEPNIVYNHD EPLECDAIVW TAGIQANEVV 240
  241 RNLPVEQDGS GRVVLTKYHN IPNNEHVYVV GDCAALPHAP SAQLAEGQGE QIVQILLKRW 300
  301 HNEPLPDELP VIKLKGVLGS LGKKHGFGLL ANQPLMGRVP RLLKSGILWM YKYHNG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.39794
Match:	1ebdA
Description:	Dihydrolipoamide dehydrogenase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.17175065164381	bayes_pls_golite062009
oxidoreductase activity	0.798047390192481	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: