YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30265099, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	393 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30265099, gi|....

Description	E-value	Query Range	Subject Range
gi\|50752715 - gi\|50752715\|ref\|XP_413724.1\| PREDICTED: similar to Na+-dependent purine-selective nucleoside transpo...	0.0	[2..392]	[785..1198]
S28A2_MOUSE - Sodium/nucleoside cotransporter 2 OS=Mus musculus GN=Slc28a2 PE=1 SV=2	0.0	[2..392]	[174..587]
SLC28A1 - solute carrier family 28 (sodium-coupled nucleoside transporter), member 1	0.0	[2..392]	[177..590]
gi\|114658654 - gi\|114658654\|ref\|XP_510563.2\| PREDICTED: solute carrier family 28 (sodium-coupled nucleoside transpo...	0.0	[2..392]	[177..590]
gi\|15721849 - gi\|15721849\|gb\|AAK38150.1\| concentrative Na+ nucleoside cotransporter [Rattus norvegicus]	0.0	[2..392]	[173..586]

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Predicted Domain #1

Region A:
Residues: [1-81]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFVMFLVGL LVVFVLGFLI SADRKKIKYK PIAIMLVIQL ALSYFLLNTQ VGYILVKGIS  60
   61 DGFGALLGYA EAGIVFVFGG L

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	32.79588
Match:	PF01773.11
Description:	No description for PF01773.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [82-200]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VNKGEVSFFL TALLPIVFFA VLIGILQHFK ILPIFIRAIG TLLSKVNGLG KLESYNAVAA  60
   61 AIVGQAEVFI TVKDQLSKIP KHRLYTLCAS SMSTVSMSIV GSYMKMIEPK YVVTALVLN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	14.200659
Match:	PF07670.5
Description:	No description for PF07670.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [201-393]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LFSGFIIIHI INPYDITEEE DTLKLENKKK QSFFEMLSEY IMLGFTIAIT VAAMLLGFVA  60
   61 LITAINSLFD SMFGITFQAI LGYIFSPLAF VMGIPQAEMV TAGQIMATKL VSNEFVAMLD 120
  121 LGKVAGDLSA RTVGILSVFL VSFANFSSIG IIAGATKGID ENQSNVVSSF GLRLVYGATL 180
  181 VSILSAIIVG VML

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	97.537602
Match:	PF07662.4
Description:	No description for PF07662.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits