YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|65317198, gi\|...
Organism:	Bacillus anthracis str. A2012
Length:	552 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|65317198, gi|....

Description	E-value	Query Range	Subject Range
gi\|82948068, gi\|... - gi\|83313227\|ref\|YP_423491.1\| L-lactate permease [Magnetospirillum magneticum AMB-1], gi\|82948068\|dbj...	0.0	[1..552]	[205..751]
gi\|42784387, gi\|... - gi\|42784387\|ref\|NP_981634.1\| L-lactate permease [Bacillus cereus ATCC 10987], gi\|42740319\|gb\|AAS4424...	0.0	[1..552]	[1..552]
gi\|82737639, gi\|... - gi\|82737639\|ref\|ZP_00900486.1\| L-lactate permease [Pseudomonas putida F1], gi\|82715292\|gb\|EAP50359.1... gi\|24986489, gi\|... - gi\|26991418\|ref\|NP_746843.1\| L-lactate transport [Pseudomonas putida KT2440], gi\|24986489\|gb\|AAN7030...	0.0	[1..551]	[1..553]
gi\|30023260, gi\|... - gi\|30023260\|ref\|NP_834891.1\| L-lactate permease [Bacillus cereus ATCC 14579], gi\|29898820\|gb\|AAP1209... gi\|228652813, gi... - gi\|229130474\|ref\|ZP_04259430.1\| Glycolate permease glcA [Bacillus cereus BDRD-Cer4], gi\|228652813\|gb...	0.0	[1..552]	[1..553]
gi\|152977432, gi... - gi\|89201151\|ref\|ZP_01179897.1\| L-lactate permease [Bacillus cereus subsp. cytotoxis NVH 391-98], gi\|...	0.0	[1..552]	[1..553]
gi\|194459241, gi... - gi\|194472877\|ref\|ZP_03078861.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Kent... gi\|197291254, gi... - gi\|197291254\|gb\|EDY30606.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Schwarze... gi\|62182186, gi\|... - gi\|62182186\|ref\|YP_218603.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Cholera... gi\|205333228, gi... - gi\|205333228\|gb\|EDZ19992.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Kentucky... gi\|224585493, gi... - gi\|224585493\|ref\|YP_002639292.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Par... gi\|204321998, gi... - gi\|204928565\|ref\|ZP_03219764.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Javi... gi\|194737852, gi... - gi\|194737852\|ref\|YP_002116629.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Sch...	0.0	[1..552]	[1..551]
gi\|214001126 - gi\|214001126\|ref\|ZP_03411861.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Typh... LLDP_SALTI - L-lactate permease OS=Salmonella typhi GN=lldP PE=3 SV=1 LLDP_SALTI - L-lactate permease OS=Salmonella typhi GN=lldP PE=3 SV=1 gi\|213647892 - gi\|213647892\|ref\|ZP_03377945.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Typh... gi\|213427162 - gi\|213427162\|ref\|ZP_03359912.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Typh... gi\|29139743, gi\|... - gi\|29144106\|ref\|NP_807448.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Typhi s... gi\|16762617 - gi\|16762617\|ref\|NP_458234.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Typhi s...	0.0	[1..552]	[1..551]
gi\|198242134, gi... - gi\|198242134\|ref\|YP_002217654.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Dub... lcl\|NC_016856.1_... - [gene=lldP] [protein=L-lactate permease] [protein_id=YP_005239931.1] [location=3899604..3901259] gi\|197264645, gi... - gi\|197264645\|ref\|ZP_03164719.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Sain... LLDP_SALTY - L-lactate permease OS=Salmonella typhimurium GN=lldP PE=3 SV=1 gi\|195632495, gi... - gi\|195632495\|gb\|EDX50979.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Newport ... gi\|205327790, gi... - gi\|205327790\|gb\|EDZ14554.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar 4,[5],12... LLDP_SALTY - L-lactate permease OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=lldP PE=3 SV=1 gi\|206710732, gi... - gi\|207858929\|ref\|YP_002245580.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Ent... LLDP_SALTY - L-lactate permease OS=Salmonella typhimurium GN=lldP PE=3 SV=1	0.0	[1..552]	[1..551]
gi\|95108990 - gi\|95108990\|emb\|CAK13686.1\| L-lactate permease [Pseudomonas entomophila L48] gi\|104780003, gi... - gi\|95108990\|emb\|CAK13686.1\| L-lactate permease [Pseudomonas entomophila L48], gi\|104780003\|ref\|YP_60...	0.0	[1..551]	[1..553]
gi\|56129839, gi\|... - gi\|56415582\|ref\|YP_152657.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Paratyp...	0.0	[1..552]	[1..551]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTWTQVYDP FGNIWISAAV ALIPIIFFFL ALAVFRMKGY VAGFITVVLT ILVALFAYKM  60
   61 PFTMAMAATG YGFLYGLWPI AWIIIMSVFL YKISVKTGQF DVIRASVLSI TNDHRLLVIL 120
  121 IGFSFGAFLE GAAG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [135-341]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FGAPVAITAA LLAGLGLNPL YAAGLCLIAN TAPVAFGAMG IPITVAGQVT GIDPHKIGQM  60
   61 AGHQLPFLSL FVPFFIVFLM DGLKGVRQTW PALLVAGSSF AITQFITATF LGPELPDITS 120
  121 ALVSLVSLAL FLKVWQPKEI YQSGQANSEA AATTAASMPK LTIGKVVKAW SPFIVLTVMV 180
  181 VIWSQSFFKA LFAPGGALES LVFKFEI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [342-408]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PGLHNLVMKA EPIVNKPTPY EAILKFDVLS ATGTAILIAC LISMLILKMS VKDAAVTFKE  60
   61 TLSELKM

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [409-552]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PILSIGFVLG FAFIANYSGL SSTLALALAG TGGLFPFFSP FLGWIGVFLT GSDTSANALF  60
   61 SNLQAITAQQ VGVSEVLLVA ANTTGGVTGK MISPQSIAIA CAAVGLAGKE SDLFRFTVKH 120
  121 SLFFVIIVGI MTYVQAYYLT WMIP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits