YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260010, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	168 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260010, gi|....

Description	E-value	Query Range	Subject Range
ATPF_AMBTC - ATP synthase subunit b, chloroplastic OS=Amborella trichopoda GN=atpF PE=3 SV=1	7.0E-31	[5..168]	[17..180]
gi\|69215356 - gi\|69215356\|gb\|AAZ03830.1\| ATP synthase CF0 B chain [Ginkgo biloba]	1.0E-30	[5..168]	[17..185]
ATPF_ACOCL - ATP synthase subunit b, chloroplastic OS=Acorus calamus GN=atpF PE=3 SV=1 gi\|69215354, gi\|... - gi\|69215354\|gb\|AAZ03829.1\| ATP synthase CF0 B chain [Acorus americanus], gi\|161622296\|ref\|YP_0015861...	4.0E-30	[5..168]	[17..180]
gi\|82754615 - gi\|82754615\|gb\|ABB90029.1\| ATP synthase CF0 B chain [Solanum tuberosum]	6.0E-30	[5..168]	[17..180]
ATPF_VITVI - ATP synthase subunit b, chloroplastic OS=Vitis vinifera GN=atpF PE=3 SV=1	9.0E-30	[5..168]	[17..180]
ATPF_SOLLC - ATP synthase subunit b, chloroplastic OS=Solanum lycopersicum GN=atpF PE=3 SV=1 ATPF_SOLTU - ATP synthase subunit b, chloroplastic OS=Solanum tuberosum GN=atpF PE=3 SV=1 ATPF_SOLBU - ATP synthase subunit b, chloroplastic OS=Solanum bulbocastanum GN=atpF PE=3 SV=1	1.0E-29	[5..168]	[17..180]
ATPF_TOBAC - ATP synthase subunit b, chloroplastic OS=Nicotiana tabacum GN=atpF PE=2 SV=3	1.0E-29	[5..168]	[17..180]
gi\|81238325, gi\|... - gi\|81238325\|ref\|NP_054482.2\| ATP synthase CF0 B subunit [Nicotiana tabacum], gi\|76559638\|emb\|CAA7734... ATPF_NICSY - ATP synthase subunit b, chloroplastic OS=Nicotiana sylvestris GN=atpF PE=3 SV=1	2.0E-29	[5..168]	[17..180]
ATPF_ATRBE - ATP synthase subunit b, chloroplastic OS=Atropa belladonna GN=atpF PE=3 SV=1	2.0E-29	[5..168]	[17..180]

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Predicted Domain #1

Region A:
Residues: [1-74]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTLLLGAAI PFGTIAYTLF IFLLLLVMLR KFAWGPLMGI MKEREEHVAN EIDAAERNNA  60
   61 EAKKLVEEQR EMLK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [75-168]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QSRVEAQELI ERAKKQAVDQ KDVIVAAAKE EAESIKASAV QEIQREKEQA IAALQEQVAS  60
   61 LSVQIASKVI EKELKEEDQV KLIRDYIKEV GEAR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.30103
Match:	2dm9A
Description:	No description for 2dm9A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits