YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15839034, gi\|...
Organism:	Xylella fastidiosa 9a5c
Length:	295 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15839034, gi|....

Description	E-value	Query Range	Subject Range
gi\|28057448, gi\|... - gi\|28199342\|ref\|NP_779656.1\| pantothenase [Xylella fastidiosa Temecula1], gi\|28057448\|gb\|AAO29305.1\|... gi\|182632177, gi... - gi\|182682067\|ref\|YP_001830227.1\| Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase [X...	312.0	[0..1]	[295..1]
gi\|71729781, gi\|... - gi\|71900475\|ref\|ZP_00682606.1\| Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase [Xyl...	311.0	[0..1]	[295..1]
gi\|170730708, gi... - gi\|170730708\|ref\|YP_001776141.1\| pantothenase [Xylella fastidiosa M12], gi\|167965501\|gb\|ACA12511.1\| ... gi\|71898745, gi\|... - gi\|71898745\|ref\|ZP_00680914.1\| Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase [Xyl... gi\|22994278, gi\|... - gi\|71276216\|ref\|ZP_00652495.1\| Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase [Xyl...	310.0	[0..1]	[295..1]
gi\|84623702, gi\|... - gi\|84623702\|ref\|YP_451074.1\| beta-alanine synthetase [Xanthomonas oryzae pv. oryzae MAFF 311018], gi...	310.0	[0..1]	[295..1]
gi\|21243038, gi\|... - gi\|21243038\|ref\|NP_642620.1\| beta-alanine synthetase [Xanthomonas axonopodis pv. citri str. 306], gi...	309.0	[0..1]	[295..1]
gi\|58581799, gi\|... - gi\|58581799\|ref\|YP_200815.1\| beta-alanine synthetase [Xanthomonas oryzae pv. oryzae KACC10331], gi\|5...	308.0	[0..1]	[295..15]
gi\|78036487, gi\|... - gi\|78048057\|ref\|YP_364232.1\| putative carbon-nitrogen hyrolase family protein [Xanthomonas campestri...	308.0	[0..1]	[295..1]
gi\|66573572, gi\|... - gi\|66768240\|ref\|YP_243002.1\| beta-alanine synthetase [Xanthomonas campestris pv. campestris str. 800... gi\|21113332, gi\|... - gi\|21231638\|ref\|NP_637555.1\| beta-alanine synthetase [Xanthomonas campestris pv. campestris str. ATC... gi\|188991376, gi... - gi\|188991376\|ref\|YP_001903386.1\| Putative carbon-nitrogen hyrolase family protein [Xanthomonas campe...	308.0	[0..1]	[295..1]
gi\|114320600, gi... - gi\|78700084\|ref\|ZP_00864541.1\| glycosyl hydrolase, family 10 [Alkalilimnicola ehrlichei MLHE-1], gi\|...	306.0	[0..5]	[295..3]
gi\|106890750, gi... - gi\|148656858\|ref\|YP_001277063.1\| Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase [R...	302.0	[0..3]	[295..2]

Back

Predicted Domain #1

Region A:
Residues: [1-295]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPHLLPVAL IQERNHGTAE ANLSIIEARV TEAAAQGAQL VLLHELHNSA YFCQHESVNE  60
   61 FDLAEPIPGP STERLSALAK QHRVVIIGSL FEKRAAGLYH NTAVVLEKDG RLVGKYRKMH 120
  121 IPDDPGFYEK FYFTPGDIGF KPIDTSVGRL GVLVCWDQWY PEAARLMALA GAELLLYPTA 180
  181 IGWDPNDEHD EQTRQRDAWL LSHRGHAIAN SLPVLSCNRT GHEPSPLGTS GIHFWGNSHV 240
  241 LGPQGEFLAE ANSNGPEILT CEINLQRSEH VRRIWPFLRD RRIDAYGDLL KRYID

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	61.0
Match:	1f89A
Description:	hypothetical protein yl85
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	2.08563993959019	bayes_pls_golite062009
catalytic activity	1.64442398754697	bayes_pls_golite062009
binding	1.58491015879508	bayes_pls_golite062009
N-carbamoylputrescine amidase activity	0.749539597459006	bayes_pls_golite062009
protein binding	0.276768866737717	bayes_pls_golite062009
hydrolase activity	0.06604196264626	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: