YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15839028, gi\|...
Organism:	Xylella fastidiosa 9a5c
Length:	126 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15839028, gi|....

Description	E-value	Query Range	Subject Range
gi\|71162971, gi\|... - gi\|71276210\|ref\|ZP_00652489.1\| Integration host factor, beta subunit [Xylella fastidiosa Dixon], gi\|... IHFB_XYLFA - Integration host factor subunit beta OS=Xylella fastidiosa (strain 9a5c) GN=ihfB PE=3 SV=2 gi\|71900469, gi\|... - gi\|71900469\|ref\|ZP_00682600.1\| Integration host factor, beta subunit [Xylella fastidiosa Ann-1], gi\|... IHFB_XYLFA - Integration host factor subunit beta OS=Xylella fastidiosa GN=ihfB PE=3 SV=2	127.0	[0..23]	[126..1]
IHFB_RHORT - Integration host factor subunit beta OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 4...	126.0	[0..23]	[122..1]
IHFB_XYLFT - Integration host factor subunit beta OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=ihfB ... gi\|71731516, gi\|... - gi\|71898751\|ref\|ZP_00680920.1\| Integration host factor, beta subunit [Xylella fastidiosa Ann-1], gi\|... IHFB_XYLF2 - Integration host factor subunit beta OS=Xylella fastidiosa (strain M23) GN=ihfB PE=3 SV=1	125.0	[0..23]	[126..1]
IHFB_HAHCH - Integration host factor subunit beta OS=Hahella chejuensis (strain KCTC 2396) GN=ihfB PE=3 SV=1	125.0	[0..23]	[118..1]
IHFB_METCA - Integration host factor subunit beta OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / ... IHFB_METCA - Integration host factor subunit beta OS=Methylococcus capsulatus GN=ihfB PE=3 SV=1	124.0	[0..23]	[116..1]
gi\|110834605, gi... - gi\|110834605\|ref\|YP_693464.1\| integration host factor beta-subunit [Alcanivorax borkumensis SK2], gi...	124.0	[0..21]	[124..1]
gi\|113724087, gi... - gi\|113875483\|ref\|ZP_01415608.1\| nucleoid DNA-binding protein-like [Sinorhizobium medicae WSM419], gi...	124.0	[0..23]	[113..101]
IHFB_ALKEH - Integration host factor subunit beta OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 ...	122.0	[0..23]	[119..1]
gi\|17982826, gi\|... - gi\|17987160\|ref\|NP_539794.1\| DNA-binding protein HU-alpha [Brucella melitensis 16M], gi\|17982826\|gb\|... gi\|25294361 - pir\|\|AG3361 DNA-binding protein Hu-alpha [imported] - Brucella melitensis (strain 16M) gi\|225627579, gi... - gi\|225627579\|ref\|ZP_03785616.1\| DNA-binding protein HRL18 [Brucella ceti str. Cudo], gi\|225617584\|gb... gi\|237788827, gi... - gi\|237815529\|ref\|ZP_04594526.1\| DNA-binding protein HRL18 [Brucella abortus str. 2308 A], gi\|2377888...	122.0	[0..21]	[114..1]
gi\|31789462 - gi\|31789462\|gb\|AAP58576.1\| putative DNA-binding protein [uncultured Acidobacteria bacterium]	122.0	[0..23]	[125..1]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRSRWFYLD RFRCQVIFCL LPMTKSELIE ILTKRQAHLK SDDVDLAVKS LLEMMGGALS  60
   61 EGDRIEIRGF GSFSLHYRPP RCGRNPKTGE SVALPGKYVP HFKPGKELRE RVASVVPLAE 120
  121 CGDITE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.045757
Match:	2iifA
Description:	No description for 2iifA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits