YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15838578, gi\|...
Organism:	Xylella fastidiosa 9a5c
Length:	187 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15838578, gi|....

Description	E-value	Query Range	Subject Range
gi\|71163438, gi\|... - gi\|71275860\|ref\|ZP_00652144.1\| transferase hexapeptide repeat [Xylella fastidiosa Dixon], gi\|7116343... gi\|71899356, gi\|... - gi\|71899356\|ref\|ZP_00681516.1\| transferase hexapeptide repeat [Xylella fastidiosa Ann-1], gi\|7173087...	173.0	[0..1]	[187..1]
gi\|182631530, gi... - gi\|182681420\|ref\|YP_001829580.1\| transferase [Xylella fastidiosa M23], gi\|182631530\|gb\|ACB92306.1\| t... gi\|28056818, gi\|... - gi\|28198727\|ref\|NP_779041.1\| transferase [Xylella fastidiosa Temecula1], gi\|28056818\|gb\|AAO28690.1\| ... gi\|22997601, gi\|... - gi\|71897945\|ref\|ZP_00680150.1\| transferase hexapeptide repeat [Xylella fastidiosa Ann-1], gi\|7173218...	168.0	[0..1]	[186..1]
gi\|21537242 - gi\|21537242\|gb\|AAM61583.1\| unknown [Arabidopsis thaliana]	158.0	[0..5]	[186..46]
gi\|113532294, gi... - gi\|56785028\|dbj\|BAD82610.1\| putative gamma-carbonic anhydrase [Oryza sativa Japonica Group], gi\|2226...	156.0	[0..5]	[181..46]
gi\|21241122, gi\|... - gi\|21241122\|ref\|NP_640704.1\| transferase [Xanthomonas axonopodis pv. citri str. 306], gi\|21106423\|gb...	154.0	[0..1]	[175..1]
gi\|58583851, gi\|... - gi\|58583851\|ref\|YP_202867.1\| transferase [Xanthomonas oryzae pv. oryzae KACC10331], gi\|58428445\|gb\|A...	154.0	[0..1]	[175..36]

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Predicted Domain #1

Region A:
Residues: [1-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPIRPFLDK TPQLGCAVYI DPTSTVIGDV ILGDDVSVWP QTVIRGDVNH IRIGARTNIQ  60
   61 DGTIIHVSHH SPYNTAGYPT LIGTDVTIGH GTIIHACTIE KLCLIGMGAC ILDGATIKKY 120
  121 GFVGAGAVIS PNKVVGEAEL WLGNPARLVR KLSDKEIESL HYSAQHYVKL KNGYLSLSAE 180
  181 TTSTPSP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.69897
Match:	1xhdA
Description:	X-ray crystal structure of putative acetyltransferase, product of BC4754 gene [Bacillus cereus]
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.59855937987599	bayes_pls_golite062009
transferase activity	1.3237300007392	bayes_pls_golite062009
transferase activity, transferring acyl groups	0.886009567107207	bayes_pls_golite062009
transferase activity, transferring acyl groups other than amino-acyl groups	0.876088267537604	bayes_pls_golite062009
acyltransferase activity	0.870444687691191	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: