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View Structure Prediction Details

Protein: PRMC_XYLFA
Organism: Xylella fastidiosa 9a5c
Length: 275 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRMC_XYLFA.

Description E-value Query
Range
Subject
Range
gi|28805730 - gi|28805730|dbj|BAC59007.1| HemK protein [Vibrio parahaemolyticus RIMD 2210633]
gi|28805730, gi|... - gi|28897518|ref|NP_797123.1| HemK protein [Vibrio parahaemolyticus RIMD 2210633], gi|28805730|dbj|BA...
208.0 [0..1] [270..11]
gi|91228928, gi|... - gi|91228928|ref|ZP_01262826.1| HemK protein [Vibrio alginolyticus 12G01], gi|91187511|gb|EAS73845.1|...
208.0 [0..1] [270..11]
gi|20515121, gi|... - gi|20806671|ref|NP_621842.1| rRNA or tRNA methylase [Thermoanaerobacter tengcongensis MB4], gi|20515...
gi|20806671 - gi|20806671|ref|NP_621842.1| predicted rRNA or tRNA methylase [Thermoanaerobacter tengcongensis MB4]
207.0 [0..14] [271..25]
gi|254230551, gi... - gi|75854051|ref|ZP_00761773.1| COG2890: Methylase of polypeptide chain release factors [Vibrio sp. E...
206.0 [0..1] [270..11]
gi|54298227, gi|... - gi|54298227|ref|YP_124596.1| hypothetical protein lpp2285 [Legionella pneumophila str. Paris], gi|53...
206.0 [0..3] [274..3]
gi|52842547, gi|... - gi|52842547|ref|YP_096346.1| protein methyltransferase HemK [Legionella pneumophila subsp. pneumophi...
205.0 [0..3] [274..3]
gi|53755010, gi|... - gi|54295178|ref|YP_127593.1| hypothetical protein lpl2258 [Legionella pneumophila str. Lens], gi|537...
205.0 [0..3] [274..3]
gi|196113152, gi... - gi|88796062|ref|ZP_01111746.1| peptide release factor-glutamine N5-methyltransferase [Alteromonas ma...
205.0 [0..1] [273..7]
PRMC_VIBF1 - Release factor glutamine methyltransferase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=prmC P...
201.0 [0..1] [272..9]
gi|37525988, gi|... - gi|37525988|ref|NP_929332.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase [Photo...
200.0 [0..1] [274..7]

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Predicted Domain #1
Region A:
Residues: [1-275]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSPIALLTA ATERIERVDA EALLLHALDC DRAWLFTHGD IPLAAAATES FQALVEQRAR  60
   61 GIPVAYLIGR RGFWTLDVMV SSATLIPRAE TETLVEQALQ RLDHASERRV ADLGTGSGAI 120
  121 ALAIACERPQ AQVLATDNSA AALDIAARNA SAHGLNHVVF REGDWYEALL GERFDLIVSN 180
  181 PPYIAVTDPH LTQGDLRFEP PSALISGGDG LDALRILTAG APAYLRPGGW LVMEHGWDQG 240
  241 AAMRTLLHTA GLVAVATVQD LEARDRVTVG RCPGF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 47.39794
Match: 1t43A
Description: Crystal Structure Analysis of E.coli Protein (N5)-Glutamine Methyltransferase (HemK)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
S-adenosylmethionine-dependent methyltransferase activity 4.81722723955895 bayes_pls_golite062009
methyltransferase activity 4.64500705012502 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 4.57389022626587 bayes_pls_golite062009
DNA-methyltransferase activity 3.31632172292823 bayes_pls_golite062009
N-methyltransferase activity 3.00112136063228 bayes_pls_golite062009
protein methyltransferase activity 2.74535979387581 bayes_pls_golite062009
transferase activity 2.42370637689376 bayes_pls_golite062009
site-specific DNA-methyltransferase (adenine-specific) activity 2.17404404470337 bayes_pls_golite062009
catalytic activity 1.62377578202456 bayes_pls_golite062009
histone methyltransferase activity 1.42140847541194 bayes_pls_golite062009
arginine N-methyltransferase activity 1.40233857644962 bayes_pls_golite062009
protein-arginine N-methyltransferase activity 1.40233857644962 bayes_pls_golite062009
RNA methyltransferase activity 1.36067005317038 bayes_pls_golite062009
rRNA methyltransferase activity 0.740099749645209 bayes_pls_golite062009
histone-arginine N-methyltransferase activity 0.67380437956274 bayes_pls_golite062009
DNA (cytosine-5-)-methyltransferase activity 0.6110460718981 bayes_pls_golite062009
protein-arginine omega-N monomethyltransferase activity 0.355464145533041 bayes_pls_golite062009
O-methyltransferase activity 0.32686871890222 bayes_pls_golite062009
protein-arginine omega-N symmetric methyltransferase activity 0.255084448603261 bayes_pls_golite062009
binding 0.207713650201315 bayes_pls_golite062009
rRNA (guanine) methyltransferase activity 0.11336280953361 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle