YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15836972, gi\|...
Organism:	Xylella fastidiosa 9a5c
Length:	220 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15836972, gi|....

Description	E-value	Query Range	Subject Range
gi\|182682305, gi... - gi\|182682305\|ref\|YP_001830465.1\| fimbrial assembly family protein [Xylella fastidiosa M23], gi\|18263... gi\|28199569, gi\|... - gi\|28199569\|ref\|NP_779883.1\| fimbrial assembly membrane protein [Xylella fastidiosa Temecula1], gi\|2...	269.0	[0..1]	[220..1]
gi\|71900201, gi\|... - gi\|71900201\|ref\|ZP_00682340.1\| Fimbrial assembly [Xylella fastidiosa Ann-1], gi\|71730034\|gb\|EAO32126...	269.0	[0..1]	[220..1]
gi\|71729133, gi\|... - gi\|71901090\|ref\|ZP_00683198.1\| Fimbrial assembly [Xylella fastidiosa Ann-1], gi\|71729133\|gb\|EAO31256... gi\|167965733, gi... - gi\|170730940\|ref\|YP_001776373.1\| fimbrial assembly membrane protein [Xylella fastidiosa M12], gi\|167... gi\|71276557, gi\|... - gi\|71276557\|ref\|ZP_00652831.1\| Fimbrial assembly [Xylella fastidiosa Dixon], gi\|71162628\|gb\|EAO12356...	268.0	[0..1]	[220..1]
gi\|21109736, gi\|... - gi\|21244109\|ref\|NP_643691.1\| fimbrial assembly membrane protein [Xanthomonas axonopodis pv. citri st...	214.0	[0..1]	[197..1]
gi\|21232660, gi\|... - gi\|21232660\|ref\|NP_638577.1\| fimbrial assembly membrane protein [Xanthomonas campestris pv. campestr... gi\|66767272, gi\|... - gi\|66767272\|ref\|YP_242034.1\| fimbrial assembly membrane protein [Xanthomonas campestris pv. campestr...	211.0	[0..1]	[201..1]
gi\|78049056, gi\|... - gi\|78049056\|ref\|YP_365231.1\| Tfp pilus assembly protein [Xanthomonas campestris pv. vesicatoria str....	207.0	[0..1]	[194..1]
gi\|53726588, gi\|... - gi\|53726588\|ref\|ZP_00347627.1\| COG3166: Tfp pilus assembly protein PilN [Pseudomonas aeruginosa UCBP...	205.0	[0..1]	[195..1]
gi\|218774370, gi... - gi\|218894142\|ref\|YP_002443011.1\| type 4 fimbrial biogenesis protein PilN [Pseudomonas aeruginosa LES... gi\|530857, gi\|74... - pir\|\|S77727 type 4 fimbrial biogenesis protein PilN PA5043 [imported] - Pseudomonas aeruginosa (stra... gi\|15600236, gi\|... - gi\|9951333\|gb\|AAG08428.1\|AE004917_7 type 4 fimbrial biogenesis protein PilN [Pseudomonas aeruginosa ... gi\|107104143 - gi\|107104143\|ref\|ZP_01368061.1\| hypothetical protein PaerPA_01005216 [Pseudomonas aeruginosa PACS2] gi\|254244075, gi... - gi\|84323870\|ref\|ZP_00971937.1\| COG3166: Tfp pilus assembly protein PilN [Pseudomonas aeruginosa 2192...	204.0	[0..1]	[195..1]
gi\|84317710, gi\|... - gi\|84317710\|ref\|ZP_00966148.1\| COG3166: Tfp pilus assembly protein PilN [Pseudomonas aeruginosa C371...	203.0	[0..1]	[195..1]
gi\|94415414, gi\|... - gi\|94415414\|ref\|ZP_01295255.1\| hypothetical protein PaerP_01002782 [Pseudomonas aeruginosa PA7], gi\|...	200.0	[0..1]	[195..1]

Back

Predicted Domain #1

Region A:
Residues: [1-220]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARINLLPWR VERRKQRERE FYMMLGFSTL VGILVSALVW FYYDAQVSGQ NDRNAFLASE  60
   61 IEGVKAQNRE IDQLDKKKEH LLARKKVIEE LQSNRSQMVH LFDSLARTIP DGVVLTTIKQ 120
  121 EGNSVTLQGR SQSNVRVSTY MRNIEGSGWM TNPDLSIIEA KEQDKNTLID SRALPYVFTI 180
  181 KAKLSKPEST DDARHRPISP TSGKAVVAPS ADFKPLSEAN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	82.244125
Match:	PF05137.4
Description:	No description for PF05137.4 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits