YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11362569
Organism:	Xylella fastidiosa
Length:	120 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11362569.

Description	E-value	Query Range	Subject Range
gi\|182630849, gi... - gi\|182680739\|ref\|YP_001828899.1\| preprotein translocase, YajC subunit [Xylella fastidiosa M23], gi\|1... gi\|71729419, gi\|... - gi\|71900798\|ref\|ZP_00682917.1\| YajC [Xylella fastidiosa Ann-1], gi\|71729419\|gb\|EAO31531.1\| YajC [Xyl...	164.0	[0..1]	[120..1]
gi\|71162835, gi\|... - gi\|71276373\|ref\|ZP_00652650.1\| YajC [Xylella fastidiosa Dixon], gi\|71162835\|gb\|EAO12560.1\| YajC [Xyl... gi\|71898644, gi\|... - gi\|71898644\|ref\|ZP_00680814.1\| YajC [Xylella fastidiosa Ann-1], gi\|71731591\|gb\|EAO33652.1\| YajC [Xyl... gi\|170729422, gi... - gi\|170729422\|ref\|YP_001774855.1\| preprotein translocase YajC subunit [Xylella fastidiosa M12], gi\|16...	162.0	[0..1]	[120..1]
gi\|21231814, gi\|... - gi\|21231814\|ref\|NP_637731.1\| preprotein translocase subunit YajC [Xanthomonas campestris pv. campest... gi\|167732951, gi... - gi\|188991191\|ref\|YP_001903201.1\| preprotein translocase subunit YajC [Xanthomonas campestris pv. cam... gi\|66768060, gi\|... - gi\|66768060\|ref\|YP_242822.1\| preprotein translocase subunit YajC [Xanthomonas campestris pv. campest...	153.0	[0..5]	[119..1]
gi\|28056171, gi\|... - gi\|28198111\|ref\|NP_778425.1\| preprotein translocase subunit YajC [Xylella fastidiosa Temecula1], gi\|...	153.0	[0..7]	[120..1]
gi\|83593100, gi\|... - gi\|83593100\|ref\|YP_426852.1\| protein translocase subunit yajC [Rhodospirillum rubrum ATCC 11170], gi... gi\|48764191 - ref\|ZP_00268743.1\| COG1862: Preprotein translocase subunit YajC [Rhodospirillum rubrum]	145.0	[0..3]	[116..1]
gi\|89094743, gi\|... - gi\|89094743\|ref\|ZP_01167678.1\| preprotein translocase, YajC subunit [Oceanospirillum sp. MED92], gi\|...	143.0	[0..8]	[118..1]
gi\|30249129, gi\|... - gi\|30249129\|ref\|NP_841199.1\| hypothetical protein NE1142 [Nitrosomonas europaea ATCC 19718], gi\|3018...	140.0	[0..10]	[120..1]
gi\|26106810, gi\|... - gi\|26246412\|ref\|NP_752451.1\| preprotein translocase subunit YajC [Escherichia coli CFT073], gi\|26106... gi\|237707599, gi... - gi\|237707599\|ref\|ZP_04538080.1\| preprotein translocase subunit YajC [Escherichia sp. 3_2_53FAA], gi\|... gi\|91209475, gi\|... - gi\|91209475\|ref\|YP_539461.1\| hypothetical protein YajC [Escherichia coli UTI89], gi\|91071049\|gb\|ABE0...	140.0	[0..6]	[119..9]
gi\|62257781 - gi\|62257781\|gb\|AAX77738.1\| unknown protein [synthetic construct]	140.0	[0..1]	[118..25]
gi\|59480676, gi\|... - gi\|59712575\|ref\|YP_205351.1\| preprotein translocase subunit YajC [Vibrio fischeri ES114], gi\|5948067...	139.0	[0..8]	[119..1]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEITMNLFDF FIPVAQAQSA APAGASPGGG LQMFFLPVIL IAVMYFSIIR PQMKRQKEYK  60
   61 SMMDHLGCGD EVITAGGIAG VVSVIGDEFV TVEIAENVRV RVQKSAIAKA LPKGSLPSAK 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	25.69897
Match:	PF02699.6
Description:	No description for PF02699.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits