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View Structure Prediction Details

Protein: gi|25295470, gi|...
Organism: Agrobacterium tumefaciens
Length: 89 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25295470, gi|....

Description E-value Query
Range
Subject
Range
RL27_XANP2 - 50S ribosomal protein L27 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rpmA PE=3 SV...
155.0 [0..1] [89..1]
RL27_DESHD - 50S ribosomal protein L27 OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=rpmA PE=3 SV...
RL27_DESHY - 50S ribosomal protein L27 OS=Desulfitobacterium hafniense (strain Y51) GN=rpmA PE=3 SV=1
152.0 [0..2] [89..10]
RK27_ARATH - 50S ribosomal protein L27, chloroplastic OS=Arabidopsis thaliana GN=RPL27 PE=2 SV=1
152.0 [0..2] [89..59]
RK27_TOBAC - 50S ribosomal protein L27, chloroplastic OS=Nicotiana tabacum GN=RPL27 PE=1 SV=1
152.0 [0..2] [89..52]
RL27_CHESB - 50S ribosomal protein L27 OS=Chelativorans sp. (strain BNC1) GN=rpmA PE=3 SV=1
151.0 [0..1] [89..1]
RK27_ORYSA - 50S ribosomal protein L27, chloroplast precursor (CL27) - Oryza sativa (Rice)
RK27_ORYSJ - 50S ribosomal protein L27, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL27 PE=2 SV=1
151.0 [0..1] [89..60]
RL27_BRUAB - 50S ribosomal protein L27 OS=Brucella abortus biovar 1 (strain 9-941) GN=rpmA PE=3 SV=1
gi|254698153 - gi|254698153|ref|ZP_05159981.1| 50S ribosomal protein L27 [Brucella abortus bv. 2 str. 86/8/59]
gi|254700491 - gi|254700491|ref|ZP_05162319.1| 50S ribosomal protein L27 [Brucella suis bv. 5 str. 513]
gi|254690002 - gi|254690002|ref|ZP_05153256.1| 50S ribosomal protein L27 [Brucella abortus bv. 6 str. 870]
gi|254694493 - gi|254694493|ref|ZP_05156321.1| 50S ribosomal protein L27 [Brucella abortus bv. 3 str. Tulya]
gi|254731036 - gi|254731036|ref|ZP_05189614.1| 50S ribosomal protein L27 [Brucella abortus bv. 4 str. 292]
gi|254703614 - gi|254703614|ref|ZP_05165442.1| 50S ribosomal protein L27 [Brucella suis bv. 3 str. 686]
RL27_BRUA2 - 50S ribosomal protein L27 OS=Brucella abortus (strain 2308) GN=rpmA PE=3 SV=1
gi|254719835 - gi|254719835|ref|ZP_05181646.1| 50S ribosomal protein L27 [Brucella sp. 83/13]
RL27_BRUO2 - 50S ribosomal protein L27 OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=rpmA PE=3 SV...
RL27_BRUSU - 50S ribosomal protein L27 OS=Brucella suis biovar 1 (strain 1330) GN=rpmA PE=3 SV=1
RL27_BRUSI - 50S ribosomal protein L27 OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=rpmA PE=3 SV=1
RL27_BRUC2 - 50S ribosomal protein L27 OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=rpmA PE=3 SV=1
RL27_BRUA1 - 50S ribosomal protein L27 OS=Brucella abortus (strain S19) GN=rpmA PE=3 SV=1
gi|237816213, gi... - gi|237816213|ref|ZP_04595208.1| ribosomal protein L27 [Brucella abortus str. 2308 A], gi|237788675|g...
RL27_BRUAB - 50S ribosomal protein L27 OS=Brucella abortus GN=rpmA PE=3 SV=1
gi|239825202, gi... - gi|239832935|ref|ZP_04681264.1| ribosomal protein L27 [Ochrobactrum intermedium LMG 3301], gi|239825...
RL27_BRUSU - 50S ribosomal protein L27 OS=Brucella suis GN=rpmA PE=3 SV=1
RL27_BRUMB - 50S ribosomal protein L27 OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=rpmA PE=3 SV=1
151.0 [0..1] [89..1]
RL27_GLOVI - 50S ribosomal protein L27 OS=Gloeobacter violaceus (strain PCC 7421) GN=rpmA PE=3 SV=1
RL27_GLOVI - 50S ribosomal protein L27 OS=Gloeobacter violaceus GN=rpmA PE=3 SV=1
149.0 [0..1] [88..1]
RL27_THETN - 50S ribosomal protein L27 OS=Thermoanaerobacter tengcongensis GN=rpmA PE=3 SV=1
RL27_CALS4 - 50S ribosomal protein L27 OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / ...
149.0 [0..2] [89..7]

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Predicted Domain #1
Region A:
Residues: [1-89]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHKKAGGSS RNGRDSESKR LGVKKFGGEA VIPGNIILRQ RGTQWHPGAN VGIGKDHTIF  60
   61 ALTAGNVNFR TKANGRVFVS VAPKAEAAE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.09691
Match: 1vs6W
Description: No description for 1vs6W was found.

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 9.93798084434094 bayes_pls_golite062009
structural molecule activity 9.3625249805433 bayes_pls_golite062009
peptidyltransferase activity 3.94173449567504 bayes_pls_golite062009
transferase activity, transferring amino-acyl groups 0.479709297593055 bayes_pls_golite062009
catalytic activity 0.161830442565647 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle