YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15157960, gi\|...
Organism:	Agrobacterium tumefaciens str. C58
Length:	237 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15157960, gi|....

Description	E-value	Query Range	Subject Range
gi\|37679281, gi\|... - gi\|37679281\|ref\|NP_933890.1\| TRAP-type C4-dicarboxylate transport system, small permease component [...	166.0	[0..52]	[230..1]
gi\|27359634, gi\|... - gi\|27363518\|ref\|NP_759046.1\| TRAP-type C4-dicarboxylate transport system, small permease component [...	165.0	[0..52]	[230..1]
gi\|152964166, gi... - gi\|69289865\|ref\|ZP_00618875.1\| Tripartite ATP-independent periplasmic transporter, DctQ component [K...	165.0	[0..47]	[226..10]
gi\|25524240, gi\|... - pir\|\|AE2970 conserved hypothetical protein Atu3366 [imported] - Agrobacterium tumefaciens (strain C5... gi\|17741755, gi\|... - gi\|17937074\|ref\|NP_533863.1\| hypothetical protein Atu3366 [Agrobacterium tumefaciens str. C58], gi\|1...	162.0	[0..26]	[212..5]
gi\|84387729, gi\|... - gi\|84387729\|ref\|ZP_00990745.1\| putative C4-dicarboxylate transport protein DctQ [Vibrio splendidus 1...	154.0	[0..49]	[230..8]
gi\|86147631, gi\|... - gi\|86147631\|ref\|ZP_01065940.1\| putative C4-dicarboxylate transport protein DctQ [Vibrio sp. MED222],...	153.0	[0..49]	[230..8]
gi\|45862012 - gi\|45862012\|gb\|AAS78787.1\| putative TRAP small permease component [Paracoccus denitrificans] gi\|119384383, gi... - gi\|69934316\|ref\|ZP_00629394.1\| Tripartite ATP-independent periplasmic transporter, DctQ component [P...	151.0	[0..62]	[237..1]
gi\|150376881, gi... - gi\|150376881\|ref\|YP_001313477.1\| tripartite ATP-independent periplasmic transporter DctQ [Sinorhizob...	151.0	[0..60]	[237..6]
gi\|75827249 - gi\|75827249\|ref\|ZP_00756684.1\| COG3090: TRAP-type C4-dicarboxylate transport system, small permease ... gi\|75814912 - gi\|75814912\|ref\|ZP_00745453.1\| COG3090: TRAP-type C4-dicarboxylate transport system, small permease ...	151.0	[0..57]	[230..1]

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Predicted Domain #1

Region A:
Residues: [1-237]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGMDIRHRG PDAQPGETRT ALGNPAKPHF GFAPRIAKTN RWSIEGDPSL KMLQIFLREG  60
   61 KMQKTINLFY RILEIILVLL LAGMSIMVFV NVVMRYTMNS GINVSEELSR YFFVWLTFLG 120
  121 AVLTFRENSH MGIETLVMFL SRRARIVCMI VSNIIILGCS AIFFWGTWKQ SAINASMHAP 180
  181 VTKLSMIWVY GIGMFTGCLM FIIALERLYR YVTGGVTEDE IAQFAGENLT IEQLSER

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.965
Match:	1nekC
Description:	Succinate dehydrogenase subunit SdhC
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.386287630369512	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: