YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15889901, gi\|...
Organism:	Agrobacterium tumefaciens str. C58
Length:	165 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15889901, gi|....

Description	E-value	Query Range	Subject Range
gi\|2137070 - gi\|2137070\|pir\|\|I48085 integral membrane protein CII-3 - Chinese hamster (fragment)	169.0	[0..10]	[158..20]
gi\|57111445 - gi\|57111445\|ref\|XP_536140.1\| PREDICTED: similar to succinate dehydrogenase complex, subunit C precur...	165.0	[0..10]	[159..16]
gi\|95769404 - gi\|95769404\|gb\|ABF57433.1\| succinate dehydrogenase complex, subunit C isoform 1 precursor [Bos tauru...	162.0	[0..10]	[159..15]
gi\|53850596, gi\|... - gi\|53850596\|ref\|NP_001005534.1\| succinate dehydrogenase complex, subunit C [Rattus norvegicus], gi\|5...	162.0	[0..10]	[160..16]
gi\|48146321 - gi\|48146321\|emb\|CAG33383.1\| SDHC [Homo sapiens]	157.0	[0..10]	[160..16]
gi\|109086211, gi... - gi\|109086211\|ref\|XP_001093733.1\| PREDICTED: similar to succinate dehydrogenase complex, subunit C is...	157.0	[0..10]	[159..16]

Back

Predicted Domain #1

Region A:
Residues: [1-165]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKRRGWCNA HSFVMCCCLG ASCLNGRTGK RREVLMANVT NNRPLSPHLQ IYKPIPTMVA  60
   61 SIVHRITGGA LYFGTLLVAW WLIALASGPA YYDWVNWAMG TIIGRLILIG YTWALVHHML 120
  121 GGLRHFMWDL GHGFDKHFTT KLAKASWVAS ICLTALIWVI VLIVR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.0
Match:	1zoyC
Description:	Crystal Structure of Mitochondrial Respiratory Complex II from porcine heart at 2.4 Angstroms
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits