YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15889898, gi\|...
Organism:	Agrobacterium tumefaciens str. C58
Length:	259 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15889898, gi|....

Description	E-value	Query Range	Subject Range
gi\|25284631 - pir\|\|D87686 succinate dehydrogenase, iron-sulfur protein [imported] - Caulobacter crescentus gi\|16127756, gi\|... - gi\|16127756\|ref\|NP_422320.1\| succinate dehydrogenase iron-sulfur subunit [Caulobacter crescentus CB1... gi\|220965750, gi... - gi\|221236577\|ref\|YP_002519014.1\| succinate dehydrogenase iron-sulfur protein [Caulobacter crescentus...	297.0	[0..1]	[257..1]
gi\|113732109, gi... - gi\|167648792\|ref\|YP_001686455.1\| succinate dehydrogenase iron-sulfur subunit [Caulobacter sp. K31], ...	289.0	[0..1]	[257..1]
gi\|99035644, gi\|... - gi\|99078506\|ref\|YP_611764.1\| succinate dehydrogenase iron-sulfur subunit [Silicibacter sp. TM1040], ...	289.0	[0..1]	[259..1]
gi\|86138972, gi\|... - gi\|86138972\|ref\|ZP_01057543.1\| succinate dehydrogenase, iron-sulfur protein [Roseobacter sp. MED193]...	288.0	[0..1]	[259..1]
gi\|86283577, gi\|... - gi\|86359475\|ref\|YP_471367.1\| succinate dehydrogenase iron-sulfur subunit [Rhizobium etli CFN 42], gi...	287.0	[0..1]	[259..1]
gi\|113873566, gi... - gi\|150398153\|ref\|YP_001328620.1\| succinate dehydrogenase iron-sulfur subunit [Sinorhizobium medicae ... gi\|15966822 - gi\|15966822\|ref\|NP_387175.1\| succinate dehydrogenase iron-sulfur subunit [Sinorhizobium meliloti 102... gi\|15076094 - gi\|15076094\|emb\|CAC47648.1\| Probable succinate dehydrogenase iron-sulfur protein [Sinorhizobium meli...	287.0	[0..1]	[258..1]
gi\|84392108, gi\|... - gi\|84500174\|ref\|ZP_00998440.1\| succinate dehydrogenase [Oceanicola batsensis HTCC2597], gi\|84392108\|...	287.0	[0..1]	[259..1]
gi\|83950423, gi\|... - gi\|83950423\|ref\|ZP_00959156.1\| succinate dehydrogenase [Roseovarius nubinhibens ISM], gi\|83838322\|gb...	287.0	[0..1]	[259..1]
gi\|14024355, gi\|... - gi\|14024355\|dbj\|BAB50959.1\| succinate dehydrogenase iron-sulfur protein subunit [Mesorhizobium loti ...	286.0	[0..1]	[259..1]
gi\|83953495, gi\|... - gi\|83953495\|ref\|ZP_00962217.1\| succinate dehydrogenase [Sulfitobacter sp. NAS-14.1], gi\|83842463\|gb\|... gi\|83845101, gi\|... - gi\|83943854\|ref\|ZP_00956311.1\| succinate dehydrogenase [Sulfitobacter sp. EE-36], gi\|83845101\|gb\|EAP...	286.0	[0..1]	[259..1]

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Predicted Domain #1

Region A:
Residues: [1-259]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVELALPKNS QISEGKVWPK PDGAKNVREY RIYRWNPDDG QNPRIDTYYI DVDDCGPMVL  60
   61 DALLYIKNNI DPTLTLRRSC REGICGSCAM NIDGTNTLAC TKGMEEIKGT VKVYPLPHMP 120
  121 VVKDLVPDLS NFYAQHRSIE PWLKTVSPTP AKEWKQSHED RLKLDGLYEC ILCACCSTSC 180
  181 PSYWWNGDRY LGPAVLLQAY RWLIDSRDEA TGERLDNLED PFRLYRCHTI MNCAQACPKG 240
  241 LNPAKAIAEI KKMMVERRV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	66.39794
Match:	1zoyB
Description:	Crystal Structure of Mitochondrial Respiratory Complex II from porcine heart at 2.4 Angstroms
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits