YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25286869
Organism:	Agrobacterium tumefaciens
Length:	198 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25286869.

Description	E-value	Query Range	Subject Range
gi\|114687774 - gi\|114687774\|ref\|XP_001134786.1\| PREDICTED: similar to mKIAA0316 protein [Pan troglodytes]	169.0	[0..8]	[194..522]
gi\|157104792, gi... - gi\|157104792\|ref\|XP_001648571.1\| ribose-phosphate pyrophosphokinase 1, putative [Aedes aegypti], gi\|...	165.0	[0..9]	[198..157]
APT_MANSM - Adenine phosphoribosyltransferase - Mannheimia succiniciproducens (strain MBEL55E)	165.0	[0..18]	[198..8]
gi\|73540069, gi\|... - gi\|73540069\|ref\|YP_294589.1\| adenine phosphoribosyltransferase [Ralstonia eutropha JMP134], gi\|72117...	163.0	[0..26]	[198..33]
gi\|117622726, gi... - gi\|117622726\|ref\|YP_851639.1\| adenine phosphoribosyltransferase [Escherichia coli APEC O1], gi\|11551... gi\|1773151 - gi\|1773151\|gb\|AAB40223.1\| adenine phosphoribosyltransferase [Escherichia coli]	162.0	[0..4]	[198..2]
APT_HAEIN - Adenine phosphoribosyltransferase OS=Haemophilus influenzae GN=apt PE=3 SV=1 APT_HAEIG - Adenine phosphoribosyltransferase OS=Haemophilus influenzae (strain PittGG) GN=apt PE=3 SV=1 gi\|42631865 - gi\|42631865\|ref\|ZP_00157403.1\| COG0503: Adenine/guanine phosphoribosyltransferases and related PRPP-... gi\|145271773, gi... - gi\|145639211\|ref\|ZP_01794818.1\| adenine phosphoribosyltransferase [Haemophilus influenzae PittII], g... APT_HAEI8 - Adenine phosphoribosyltransferase OS=Haemophilus influenzae (strain 86-028NP) GN=apt PE=3 SV=1 gi\|144978790, gi... - gi\|145629287\|ref\|ZP_01785086.1\| adenine phosphoribosyltransferase [Haemophilus influenzae 22.1-21], ... APT_HAEIN - Adenine phosphoribosyltransferase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / ... gi\|229810356, gi... - gi\|229846867\|ref\|ZP_04466974.1\| adenine phosphoribosyltransferase [Haemophilus influenzae 7P49H1], g...	162.0	[0..23]	[198..5]
APT_CUPMC - Adenine phosphoribosyltransferase OS=Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC ...	161.0	[0..26]	[198..18]
gi\|22295271, gi\|... - gi\|22299089\|ref\|NP_682336.1\| ribose-phosphate pyrophosphokinase [Thermosynechococcus elongatus BP-1]...	161.0	[0..7]	[194..185]
gi\|195326413, gi... - gi\|195326413\|ref\|XP_002029923.1\| GM24850 [Drosophila sechellia], gi\|194118866\|gb\|EDW40909.1\| GM24850... CG6767-PB - This gene is referred to in FlyBase by the symbol Dmel\CG6767 (CG6767, FBgn0036030). It is a protein... gi\|194196314, gi... - gi\|195589123\|ref\|XP_002084305.1\| GD12902 [Drosophila simulans], gi\|194196314\|gb\|EDX09890.1\| GD12902 ... gi\|195490734, gi... - gi\|195490734\|ref\|XP_002093265.1\| GE21218 [Drosophila yakuba], gi\|194179366\|gb\|EDW92977.1\| GE21218 [D...	161.0	[0..9]	[198..173]

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Predicted Domain #1

Region A:
Residues: [1-198]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGWPELPDP FPILTGNTMT VIASELSAAI RSIPDYPKPG IIFRDITTLL GNPRAFRRAV  60
   61 DELVQPYAGT KIDKIAGMEA RGFILGGAVA HQLSAGFVPI RKKGKLPHTT VRVAYSLEYG 120
  121 VDEMEMHVDA VQPGEKVILV DDLIATGGTA EGAVKLLRQM GAEIVSACFV IDLPDLGGRK 180
  181 KLEDLGVDVR TLVEFSGH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.69897
Match:	2dy0A
Description:	No description for 2dy0A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits