YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17740217, gi\|...
Organism:	Agrobacterium tumefaciens str. C58
Length:	242 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17740217, gi|....

Description	E-value	Query Range	Subject Range
gi\|115256788, gi... - gi\|116252140\|ref\|YP_767978.1\| Dsb family thioredoxin protein [Rhizobium leguminosarum bv. viciae 384...	195.0	[0..21]	[242..1]
gi\|86281819, gi\|... - gi\|86357717\|ref\|YP_469609.1\| putative dithiol-disulfide isomerase protein (involved in polyketide bi...	194.0	[0..21]	[242..1]
gi\|41326746, gi\|... - gi\|62391405\|ref\|YP_226807.1\| dithiol-disulfide isomerase [Corynebacterium glutamicum ATCC 13032], gi...	185.0	[0..5]	[239..13]
gi\|15074577 - gi\|15074577\|emb\|CAC46223.1\| Conserved hypothetical protein [Sinorhizobium meliloti 1021] gi\|15965397 - gi\|15965397\|ref\|NP_385750.1\| hypothetical protein SMc00952 [Sinorhizobium meliloti 1021]	184.0	[0..21]	[240..1]
gi\|56418737, gi\|... - gi\|56418737\|ref\|YP_146055.1\| protein-disulfide isomerase [Geobacillus kaustophilus HTA426], gi\|56378...	182.0	[0..24]	[239..1]
gi\|23500321, gi\|... - gi\|23500321\|ref\|NP_699761.1\| frnE protein, putative [Brucella suis 1330], gi\|23463934\|gb\|AAN33766.1\|... gi\|17989035, gi\|... - gi\|17989035\|ref\|NP_541668.1\| FRNE [Brucella melitensis 16M], gi\|17984876\|gb\|AAL53932.1\| frne [Brucel... gi\|225686363, gi... - gi\|225686363\|ref\|YP_002734335.1\| DSBA oxidoreductase [Brucella melitensis ATCC 23457], gi\|225642468\|... gi\|148557851, gi... - gi\|148557851\|ref\|YP_001257566.1\| dsba oxidoreductase [Brucella ovis ATCC 25840], gi\|148369136\|gb\|ABQ... gi\|254699814 - gi\|254699814\|ref\|ZP_05161642.1\| DSBA oxidoreductase [Brucella suis bv. 5 str. 513] gi\|25367097 - pir\|\|AI3595 frnE protein [imported] - Brucella melitensis (strain 16M) gi\|225615569, gi... - gi\|225629073\|ref\|ZP_03787106.1\| FRNE [Brucella ceti str. Cudo], gi\|225615569\|gb\|EEH12618.1\| FRNE [Br... gi\|161337450, gi... - gi\|161620639\|ref\|YP_001594525.1\| DSBA oxidoreductase [Brucella canis ATCC 23365], gi\|161337450\|gb\|AB... gi\|254711154 - gi\|254711154\|ref\|ZP_05172965.1\| DSBA oxidoreductase [Brucella pinnipedialis B2/94] gi\|254702952 - gi\|254702952\|ref\|ZP_05164780.1\| DSBA oxidoreductase [Brucella suis bv. 3 str. 686] gi\|254705930 - gi\|254705930\|ref\|ZP_05167758.1\| DSBA oxidoreductase [Brucella pinnipedialis M163/99/10]	181.0	[0..22]	[233..4]
gi\|83269547 - gi\|83269547\|ref\|YP_418838.1\| DSBA oxidoreductase [Brucella melitensis biovar Abortus 2308] gi\|254691063 - gi\|254691063\|ref\|ZP_05154317.1\| DSBA oxidoreductase [Brucella abortus bv. 6 str. 870] gi\|254695631 - gi\|254695631\|ref\|ZP_05157459.1\| DSBA oxidoreductase [Brucella abortus bv. 3 str. Tulya] gi\|82939821 - gi\|82939821\|emb\|CAJ12829.1\| DSBA oxidoreductase [Brucella melitensis biovar Abortus 2308] gi\|189022820, gi... - gi\|189022820\|ref\|YP_001932561.1\| DSBA oxidoreductase [Brucella abortus S19], gi\|189021394\|gb\|ACD7411... gi\|62317566, gi\|... - gi\|62317566\|ref\|YP_223419.1\| hypothetical protein BruAb2_0647 [Brucella abortus bv. 1 str. 9-941], g... gi\|237787926, gi... - gi\|237817113\|ref\|ZP_04596105.1\| Hypothetical protein, conserved [Brucella abortus str. 2308 A], gi\|2... gi\|254698848 - gi\|254698848\|ref\|ZP_05160676.1\| DSBA oxidoreductase [Brucella abortus bv. 2 str. 86/8/59] gi\|254732295 - gi\|254732295\|ref\|ZP_05190873.1\| DSBA oxidoreductase [Brucella abortus bv. 4 str. 292]	180.0	[0..22]	[233..4]
gi\|113727530, gi... - gi\|150396612\|ref\|YP_001327079.1\| DSBA oxidoreductase [Sinorhizobium medicae WSM419], gi\|150028127\|gb...	179.0	[0..21]	[240..1]
gi\|63257848, gi\|... - gi\|66047141\|ref\|YP_236982.1\| DSBA oxidoreductase [Pseudomonas syringae pv. syringae B728a], gi\|63257...	178.0	[0..20]	[234..1]
gi\|71556191, gi\|... - gi\|71735638\|ref\|YP_276045.1\| 2-hydroxychromene-2-carboxylate isomerase family protein [Pseudomonas s...	178.0	[0..20]	[235..1]

Back

Predicted Domain #1

Region A:
Residues: [1-242]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGCKGAITRR RPVQTREDET MERIVVDVVS DMVCPWCYLG KARLDLAIAE VQDEISVDVN  60
   61 WRPYRLNPDY PPEGVDQKAA LEEKLGKDRL EQAHASLVEL GKQVGINYDF DAIKIGPNTL 120
  121 DAHRLSLWAH AEGRDVQERI VTALFKANFE EGRNIGDHAV LTDIAGKAGM DAKVVARLLA 180
  181 SDADKDTVIA EIDAAQQMGV SGVPFFIVDQ KYAISGAQTP DVLIAALRDI AKIKSDEHKS 240
  241 MN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.221849
Match:	2imdA
Description:	No description for 2imdA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits