YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17935461, gi\|...
Organism:	Agrobacterium tumefaciens str. C58
Length:	115 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17935461, gi|....

Description	E-value	Query Range	Subject Range
gi\|83593100, gi\|... - gi\|83593100\|ref\|YP_426852.1\| protein translocase subunit yajC [Rhodospirillum rubrum ATCC 11170], gi... gi\|48764191 - ref\|ZP_00268743.1\| COG1862: Preprotein translocase subunit YajC [Rhodospirillum rubrum]	153.0	[0..1]	[115..8]
gi\|134137951, gi... - gi\|67547644\|ref\|ZP_00425545.1\| YajC [Burkholderia vietnamiensis G4], gi\|67531079\|gb\|EAM27903.1\| YajC...	144.0	[0..2]	[110..3]
gi\|30249129, gi\|... - gi\|30249129\|ref\|NP_841199.1\| hypothetical protein NE1142 [Nitrosomonas europaea ATCC 19718], gi\|3018...	143.0	[0..1]	[112..1]
gi\|150027907, gi... - gi\|150396392\|ref\|YP_001326859.1\| preprotein translocase, YajC subunit [Sinorhizobium medicae WSM419]...	143.0	[0..1]	[111..1]
gi\|171992214, gi... - gi\|172059697\|ref\|YP_001807349.1\| preprotein translocase subunit YajC [Burkholderia ambifaria MC40-6]... gi\|118713625, gi... - gi\|170732042\|ref\|YP_001763989.1\| preprotein translocase subunit YajC [Burkholderia cenocepacia MC0-3... gi\|46316116, gi\|... - gi\|78065285\|ref\|YP_368054.1\| preprotein translocase subunit YajC [Burkholderia sp. 383], gi\|77966030... gi\|194557266, gi... - gi\|84356832\|ref\|ZP_00981666.1\| COG1862: Preprotein translocase subunit YajC [Burkholderia cenocepaci... gi\|116646833, gi... - gi\|67665893\|ref\|ZP_00463150.1\| YajC [Burkholderia cenocepacia HI2424], gi\|67100573\|gb\|EAM17726.1\| Ya... gi\|171094702, gi... - gi\|171320043\|ref\|ZP_02909113.1\| preprotein translocase, YajC subunit [Burkholderia ambifaria MEX-5],... gi\|67658219, gi\|... - gi\|67658219\|ref\|ZP_00455592.1\| YajC [Burkholderia cenocepacia AU 1054], gi\|67094060\|gb\|EAM11596.1\| Y... gi\|206561643, gi... - gi\|206561643\|ref\|YP_002232408.1\| preprotein translocase subunit YajC [Burkholderia cenocepacia J2315... gi\|74017111, gi\|... - gi\|74017111\|ref\|ZP_00687736.1\| YajC [Burkholderia ambifaria AMMD], gi\|72610582\|gb\|EAO46529.1\| YajC [... gi\|170131962, gi... - gi\|170703129\|ref\|ZP_02893945.1\| preprotein translocase, YajC subunit [Burkholderia ambifaria IOP40-1...	143.0	[0..2]	[110..3]
gi\|25302588 - gi\|25302588\|pir\|\|AG3386 hypothetical exported protein BMEI1077 [imported] - Brucella melitensis (str... gi\|237815321, gi... - gi\|237815321\|ref\|ZP_04594319.1\| preprotein translocase, YajC subunit [Brucella abortus str. 2308 A],... gi\|17983045, gi\|... - gi\|17987360\|ref\|NP_539994.1\| hypothetical protein BMEI1077 [Brucella melitensis 16M], gi\|17983045\|gb...	142.0	[0..1]	[114..8]
gi\|27379847, gi\|... - gi\|27379847\|ref\|NP_771376.1\| preprotein tranlocase protein [Bradyrhizobium japonicum USDA 110], gi\|2...	142.0	[0..1]	[115..1]
gi\|24374631, gi\|... - gi\|24374631\|ref\|NP_718674.1\| preprotein translocase subunit YajC [Shewanella oneidensis MR-1], gi\|24... SO3112 - preprotein translocase YajC subunit	142.0	[0..1]	[110..1]
YAJC_BRUSU - Immunogenic membrane protein YajC OS=Brucella suis biovar 1 (strain 1330) GN=yajC PE=3 SV=1 YAJC_BRUAB - Immunogenic membrane protein yajC OS=Brucella abortus GN=yajC PE=3 SV=1 gi\|189019648, gi... - gi\|189024076\|ref\|YP_001934844.1\| YajC [Brucella abortus S19], gi\|189019648\|gb\|ACD72370.1\| YajC [Bruc... gi\|163673884, gi... - gi\|163843161\|ref\|YP_001627565.1\| preprotein translocase, YajC subunit [Brucella suis ATCC 23445], gi... gi\|161335661, gi... - gi\|161618850\|ref\|YP_001592737.1\| preprotein translocase, YajC subunit [Brucella canis ATCC 23365], g... YAJC_BRUME - Immunogenic membrane protein YajC OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 1... gi\|254689140 - gi\|254689140\|ref\|ZP_05152394.1\| hypothetical protein Babob68_02930 [Brucella abortus bv. 6 str. 870] gi\|225852403, gi... - gi\|225852403\|ref\|YP_002732636.1\| preprotein translocase, YajC subunit [Brucella melitensis ATCC 2345... gi\|254697274 - gi\|254697274\|ref\|ZP_05159102.1\| hypothetical protein Babob28_06039 [Brucella abortus bv. 2 str. 86/8... gi\|254693624 - gi\|254693624\|ref\|ZP_05155452.1\| hypothetical protein Babob3T_02949 [Brucella abortus bv. 3 str. Tuly... YAJC_BRUME - Immunogenic membrane protein yajC OS=Brucella melitensis GN=yajC PE=3 SV=1 gi\|254704198 - gi\|254704198\|ref\|ZP_05166026.1\| hypothetical protein Bsuib36_09774 [Brucella suis bv. 3 str. 686] YAJC_BRUAB - Immunogenic membrane protein YajC OS=Brucella abortus biovar 1 (strain 9-941) GN=yajC PE=3 SV=1 gi\|254701654 - gi\|254701654\|ref\|ZP_05163482.1\| hypothetical protein Bsuib55_12461 [Brucella suis bv. 5 str. 513] YAJC_BRUSU - Immunogenic membrane protein yajC OS=Brucella suis GN=yajC PE=3 SV=1 gi\|254730173 - gi\|254730173\|ref\|ZP_05188751.1\| hypothetical protein Babob42_02969 [Brucella abortus bv. 4 str. 292] YAJC_BRUA2 - Immunogenic membrane protein YajC OS=Brucella abortus (strain 2308) GN=yajC PE=3 SV=1	142.0	[0..1]	[114..1]
gi\|148255767, gi... - gi\|78695106\|ref\|ZP_00859618.1\| YajC [Bradyrhizobium sp. BTAi1], gi\|78516780\|gb\|EAP30079.1\| YajC [Bra...	142.0	[0..1]	[113..1]

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Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFFSQAFAQD ASGGASGFGS GLEMLFLFAP LMVVWYFFLI RPQRAQMKKR QETLTSIRRG  60
   61 DQVVLGGGIV GKVTKVIDDN ELEVEIAEGV KIRAARAYIA EVRVKGEVVK TEAAS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	22.187087
Match:	PF02699.6
Description:	No description for PF02699.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits