YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15888797, gi\|...
Organism:	Agrobacterium tumefaciens str. C58
Length:	264 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15888797, gi|....

Description	E-value	Query Range	Subject Range
HGNC:18802\|MIM:6... - synthase mitochondrial F1 complex assembly factor 2 gi\|117645306 - gi\|117645306\|emb\|CAL38119.1\| hypothetical protein [synthetic construct] ATPAF2 - ATP synthase mitochondrial F1 complex assembly factor 2	359.0	[0..2]	[264..13]
gi\|114668878, gi... - gi\|114668880\|ref\|XP_001159122.1\| PREDICTED: ATP synthase mitochondrial F1 complex assembly factor 2 ...	358.0	[0..2]	[264..13]
gi\|62656170, gi\|... - gi\|62656170\|ref\|XP_220522.3\| PREDICTED: similar to ATP synthase mitochondrial F1 complex assembly fa...	357.0	[0..2]	[264..22]
gi\|109113499 - gi\|109113499\|ref\|XP_001092786.1\| PREDICTED: similar to ATP synthase mitochondrial F1 complex assembl...	355.0	[0..2]	[264..13]
gi\|149262138, gi... - gi\|56205548\|emb\|CAI24077.1\| ATP synthase mitochondrial F1 complex assembly factor 2 [Mus musculus], ...	348.0	[0..2]	[264..22]
gi\|150396238, gi... - gi\|150396238\|ref\|YP_001326705.1\| ATP12 ATPase [Sinorhizobium medicae WSM419], gi\|150027753\|gb\|ABR598...	343.0	[0..1]	[261..1]
gi\|15965140 - gi\|15965140\|ref\|NP_385493.1\| hypothetical protein SMc01277 [Sinorhizobium meliloti 1021] gi\|15074320 - gi\|15074320\|emb\|CAC45966.1\| Hypothetical protein [Sinorhizobium meliloti 1021]	343.0	[0..1]	[261..1]
ATPF2_BOVIN - ATP synthase mitochondrial F1 complex assembly factor 2 OS=Bos taurus GN=ATPAF2 PE=2 SV=1	340.0	[0..2]	[264..13]
gi\|57086735 - gi\|57086735\|ref\|XP_546658.1\| PREDICTED: similar to ATP synthase mitochondrial F1 complex assembly fa...	331.0	[0..30]	[264..4]

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Predicted Domain #1

Region A:
Residues: [1-264]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRDLLNDLSE GLSHPDPILR AQIQMQKPLP KRFYKDVTVA DVEEGGFTIL LDGKPLRTPA  60
   61 KKPLVAPSRA LADLLRDEWD AQKEVVNPVV MPVSRHVNTA IDGIASDTQA VFEDILRFSS 120
  121 SDLLCYRAGD PEALVARQTD YWDPVLDWAT NVLGARFILV EGVMHRDQPR EAIAAFAVTL 180
  181 KKYDTPIALA ALHTMTSLTG SAILALALAE GELTLEEAWA LAHLDEDWTA EQWGEDEEAL 240
  241 ERRAVRLIDM RAALNVLESL KSAS

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Detection Method:	PSI-BLAST
Confidence:	100.0
Match:	2r6iA
Description:	No description for 2r6iA was found.

Predicted functions:

Term	Confidence	Notes
binding	0.0175898537857605	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: