YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25288732, gi\|...
Organism:	Agrobacterium tumefaciens
Length:	195 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25288732, gi|....

Description	E-value	Query Range	Subject Range
gi\|27355754, gi\|... - gi\|27382582\|ref\|NP_774111.1\| phosphatidylglycerophosphate synthase [Bradyrhizobium japonicum USDA 11...	149.0	[0..2]	[195..10]
gi\|115516897, gi... - gi\|77742225\|ref\|ZP_00810704.1\| CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [R...	149.0	[0..1]	[195..9]
gi\|77655009, gi\|... - gi\|91975760\|ref\|YP_568419.1\| CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [Rho...	149.0	[0..4]	[195..28]
gi\|78518822, gi\|... - gi\|78693267\|ref\|ZP_00857781.1\| CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [B...	148.0	[0..8]	[195..16]
gi\|86571329, gi\|... - gi\|86748301\|ref\|YP_484797.1\| CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [Rho...	148.0	[0..4]	[195..28]
gi\|85716038, gi\|... - gi\|85716038\|ref\|ZP_01047015.1\| CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [N...	148.0	[0..2]	[195..10]
gi\|86357116, gi\|... - gi\|86357116\|ref\|YP_469008.1\| CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase prote...	146.0	[0..1]	[195..1]
gi\|115256000, gi... - gi\|116251352\|ref\|YP_767190.1\| putative CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransf... gi\|167358830, gi... - gi\|241203967\|ref\|YP_002975063.1\| CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase [...	146.0	[0..1]	[195..1]
gi\|75676709, gi\|... - gi\|75676709\|ref\|YP_319130.1\| CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [Nit...	146.0	[0..2]	[195..10]
gi\|114705637, gi... - gi\|114705637\|ref\|ZP_01438540.1\| probable cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltran...	145.0	[0..1]	[193..1]

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Predicted Domain #1

Region A:
Residues: [1-195]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASRAYNIPN LLTYARILAV PVIVLCFFIE GKLESSDFAR WTALWLFIVA SLTDFLDGYL  60
   61 ARIWNQTSNI GRMLDPIADK LLVASVLLLM AADGTIAGWS LWAAITILCR EILVSGLREY 120
  121 LAALKVSVPV TQIAKWKTTI QMVAIAFLLA GPAGDKVLPY TTEMGITLLW LAAALTMYTG 180
  181 YDYFKAGLKH IVDEE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	32.508638
Match:	PF01066.12
Description:	No description for PF01066.12 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits