YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25288767
Organism:	Agrobacterium tumefaciens
Length:	290 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25288767.

Description	E-value	Query Range	Subject Range
gi\|25288768 - pir\|\|AE2707 phosphatidylserine synthase [imported] - Agrobacterium tumefaciens (strain C58, Dupont) gi\|17934969, gi\|... - gi\|17934969\|ref\|NP_531759.1\| phosphatidylserine synthase [Agrobacterium tumefaciens str. C58], gi\|17...	228.0	[0..3]	[290..1]
gi\|15488440 - gi\|15488440\|gb\|AAL01116.1\| phosphatidylserine synthase [Agrobacterium sp. 31749]	205.0	[0..18]	[290..2]
gi\|9837105, gi\|1... - gi\|9837105\|gb\|AAG00422.1\|AF247564_3 phosphatidylserine synthase [Sinorhizobium meliloti], gi\|1507405... gi\|15964875 - gi\|15964875\|ref\|NP_385228.1\| putative CDP-diacylglycerol--serine O-phosphatidyltransferase transmemb...	181.0	[0..8]	[286..13]
gi\|115255946, gi... - gi\|116251298\|ref\|YP_767136.1\| putative phosphatidylserine synthase [Rhizobium leguminosarum bv. vici...	180.0	[0..3]	[274..5]
gi\|91686555, gi\|... - gi\|91782601\|ref\|YP_557807.1\| CDP-diacylglycerol--serine O- phosphatidyltransferase [Burkholderia xen...	176.0	[0..2]	[278..10]
gi\|86357048, gi\|... - gi\|86357048\|ref\|YP_468940.1\| CDP-diacylglycerol-serine O-phosphatidyltransferase protein [Rhizobium ...	176.0	[0..3]	[274..1]
gi\|150027463, gi... - gi\|150395948\|ref\|YP_001326415.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Sinorhizobium...	175.0	[0..9]	[286..20]
gi\|25529274 - pir\|\|AD3438 CDPdiacylglycerol-serine O-phosphatidyltransferase (EC 2.7.8.8) [imported] - Brucella me... gi\|17987773, gi\|... - gi\|17987773\|ref\|NP_540407.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Brucella melitens...	174.0	[0..3]	[284..16]
gi\|68555597, gi\|... - gi\|94309861\|ref\|YP_583071.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Ralstonia metalli...	173.0	[0..3]	[285..18]
gi\|90022183, gi\|... - gi\|90022183\|ref\|YP_528010.1\| CDP-diacylglycerol--serine O-phosphatidyltransferase [Saccharophagus de...	172.0	[0..10]	[289..21]

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Predicted Domain #1

Region A:
Residues: [1-212]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRMETPISEP QQNGKQEGRS DSGRGPRLRE IPFRLLVPNL ITVLAICAGL SGVRLAIEGR  60
   61 FELAVGMVLL AAFLDGVDGR VARMMKATSK FGEQMDSLAD IVNFGVAPAL VVYIYLLDQA 120
  121 RSIGWIGALI YVIAAGLRLA RFNVMIERPV KAPWQSEFFV GVPAPMGAML VLLPVYLGFL 180
  181 GVEPDKPFAY VAAAYTVLIG YLLISRLPVW SG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	19.21467
Match:	PF01066.12
Description:	No description for PF01066.12 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [213-290]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSSTRIRRDL VLPMILVVVL YVAMLMSFTW EVLVLTVAAY LVFIPISARL WHRRYGTLTI  60
   61 EEDAHDDANG GNGLDRGI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits