YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15888401, gi\|...
Organism:	Agrobacterium tumefaciens str. C58
Length:	253 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15888401, gi|....

Description	E-value	Query Range	Subject Range
gi\|186683677, gi... - gi\|53686882\|ref\|ZP_00106310.2\| COG2135: Uncharacterized conserved protein [Nostoc punctiforme PCC 73...	299.0	[0..1]	[241..1]
gi\|17230686, gi\|... - gi\|17230686\|ref\|NP_487234.1\| hypothetical protein all3194 [Nostoc sp. PCC 7120], gi\|17132289\|dbj\|BAB... gi\|25347072 - pir\|\|AC2205 hypothetical protein all3194 [imported] - Nostoc sp. (strain PCC 7120)	298.0	[0..1]	[235..1]
gi\|221314277 - gi\|221314277\|ref\|ZP_03596082.1\| hypothetical protein BsubsN3_11232 [Bacillus subtilis subsp. subtili... gi\|221319199 - gi\|221319199\|ref\|ZP_03600493.1\| hypothetical protein BsubsJ_11158 [Bacillus subtilis subsp. subtilis... YOQW_BACSU - UPF0361 protein yoqW OS=Bacillus subtilis GN=yoqW PE=3 SV=1 YOQW_BPSPB - Putative SOS response-associated peptidase yoqW OS=Bacillus phage SPbeta GN=yoqW PE=3 SV=1 YOQW_BACSU - Putative SOS response-associated peptidase YoqW OS=Bacillus subtilis (strain 168) GN=yoqW PE=3 SV=1 gi\|221323475 - gi\|221323475\|ref\|ZP_03604769.1\| hypothetical protein BsubsS_11287 [Bacillus subtilis subsp. subtilis...	295.0	[0..1]	[230..1]
gi\|45508692, gi\|... - gi\|75910096\|ref\|YP_324392.1\| hypothetical protein Ava_3892 [Anabaena variabilis ATCC 29413], gi\|7570...	294.0	[0..1]	[235..1]
gi\|116251297, gi... - gi\|116251297\|ref\|YP_767135.1\| hypothetical protein RL1531 [Rhizobium leguminosarum bv. viciae 3841],...	294.0	[0..1]	[253..1]
gi\|86357047, gi\|... - gi\|86357047\|ref\|YP_468939.1\| hypothetical protein RHE_CH01409 [Rhizobium etli CFN 42], gi\|86281149\|g...	292.0	[0..1]	[253..20]
gi\|94970917, gi\|... - gi\|94970917\|ref\|YP_592965.1\| hypothetical protein Acid345_3891 [Candidatus Koribacter versatilis Ell...	290.0	[0..1]	[240..1]
gi\|13476468, gi\|... - gi\|14027229\|dbj\|BAB54183.1\| mlr7795 [Mesorhizobium loti MAFF303099], gi\|13476468\|ref\|NP_108038.1\| hy...	290.0	[0..1]	[253..117]
gi\|15074041 - gi\|15074041\|emb\|CAC45688.1\| Conserved hypothetical protein [Sinorhizobium meliloti 1021] gi\|15964862 - gi\|15964862\|ref\|NP_385215.1\| hypothetical protein SMc02553 [Sinorhizobium meliloti 1021]	286.0	[0..1]	[253..21]
gi\|82699561 - gi\|82699561\|ref\|YP_414135.1\| hypothetical protein BAB1_0693 [Brucella melitensis biovar Abortus 2308... gi\|62195765, gi\|... - gi\|62289633\|ref\|YP_221426.1\| hypothetical protein BruAb1_0690 [Brucella abortus bv. 1 str. 9-941], g... gi\|82615662 - gi\|82615662\|emb\|CAJ10649.1\| Protein of unknown function DUF159 [Brucella melitensis biovar Abortus 2... gi\|25347070 - pir\|\|AE3411 hypothetical protein BMEI1275 [imported] - Brucella melitensis (strain 16M) gi\|161335454, gi... - gi\|161618643\|ref\|YP_001592530.1\| hypothetical protein BCAN_A0686 [Brucella canis ATCC 23365], gi\|161... gi\|254688947 - gi\|254688947\|ref\|ZP_05152201.1\| hypothetical protein Babob68_01926 [Brucella abortus bv. 6 str. 870] gi\|189023886, gi... - gi\|189023886\|ref\|YP_001934654.1\| Protein of unknown function DUF159 [Brucella abortus S19], gi\|18901... gi\|254693429 - gi\|254693429\|ref\|ZP_05155257.1\| hypothetical protein Babob3T_01944 [Brucella abortus bv. 3 str. Tuly... gi\|23501560, gi\|... - gi\|23501560\|ref\|NP_697687.1\| hypothetical protein BR0673 [Brucella suis 1330], gi\|23347472\|gb\|AAN296... gi\|225640559, gi... - gi\|225852194\|ref\|YP_002732427.1\| protein of unknown function DUF159 [Brucella melitensis ATCC 23457]... gi\|17983262, gi\|... - gi\|17987558\|ref\|NP_540192.1\| hypothetical protein BMEI1275 [Brucella melitensis 16M], gi\|17983262\|gb... gi\|237815127, gi... - gi\|237815127\|ref\|ZP_04594125.1\| Hypothetical protein, conserved [Brucella abortus str. 2308 A], gi\|2... gi\|254704005 - gi\|254704005\|ref\|ZP_05165833.1\| hypothetical protein Bsuib36_08769 [Brucella suis bv. 3 str. 686] gi\|254707619 - gi\|254707619\|ref\|ZP_05169447.1\| hypothetical protein BpinM_11776 [Brucella pinnipedialis M163/99/10] gi\|254697082 - gi\|254697082\|ref\|ZP_05158910.1\| hypothetical protein Babob28_05030 [Brucella abortus bv. 2 str. 86/8... gi\|254701459 - gi\|254701459\|ref\|ZP_05163287.1\| hypothetical protein Bsuib55_11454 [Brucella suis bv. 5 str. 513] gi\|254709797 - gi\|254709797\|ref\|ZP_05171608.1\| hypothetical protein BpinB_05906 [Brucella pinnipedialis B2/94] gi\|254729978 - gi\|254729978\|ref\|ZP_05188556.1\| hypothetical protein Babob42_01944 [Brucella abortus bv. 4 str. 292]	285.0	[0..1]	[253..1]

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Predicted Domain #1

Region A:
Residues: [1-253]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCGRFVLKAT PEEIADYLDL IGLEDFPARF NIAPTQPILV VMEGEQQERG SNLPNRRAVL  60
   61 VRWGFMPGWV KDPKDFPLLI NARSETAIGK ASFRAAMRHR RVLIPATGFY EWRRPPKEEG 120
  121 GKAQPYFIRP KNGGIVAFAG LMETWSSADG SEVDTGAILT TAANAAIGRI HDRMPVVIAP 180
  181 EDFSRWLDCK TQEPREVADL MRPVQGDFFE MIPVSDKVNK VANVGADLID PVPESAPLAK 240
  241 VRPAKDDGQM SLF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.39794
Match:	2icuA
Description:	No description for 2icuA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits