YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25304187, gi\|...
Organism:	Agrobacterium tumefaciens
Length:	134 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25304187, gi|....

Description	E-value	Query Range	Subject Range
ACPS_RHIME - Holo-[acyl-carrier-protein] synthase OS=Rhizobium meliloti GN=acpS PE=3 SV=1 ACPS_RHIME - Holo-[acyl-carrier-protein] synthase OS=Rhizobium meliloti (strain 1021) GN=acpS PE=3 SV=1	161.0	[0..1]	[132..1]
gi\|25526775 - gi\|25526775\|pir\|\|AC3413 holo-[acyl-carrier protein] synthase (EC 2.7.8.7) [imported] - Brucella meli... gi\|17987572, gi\|... - gi\|17987572\|ref\|NP_540206.1\| 4'-phosphopantetheinyl transferase [Brucella melitensis 16M], gi\|179832...	159.0	[0..1]	[132..58]
ACPS_MAGMM - Holo-[acyl-carrier-protein] synthase OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC... sp\|A0L8S4\|ACPS_MAGMM - Holo-[acyl-carrier-protein] synthase OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC...	159.0	[0..1]	[132..1]
ACPS_SINMW - Holo-[acyl-carrier-protein] synthase OS=Sinorhizobium medicae (strain WSM419) GN=acpS PE=3 SV=1	159.0	[0..1]	[132..1]
ACPS_GEODF - Holo-[acyl-carrier-protein] synthase OS=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) G...	158.0	[0..1]	[129..1]
gi\|121628741, gi... - gi\|75815088\|ref\|ZP_00745615.1\| COG0736: Phosphopantetheinyl transferase (holo-ACP synthase) [Vibrio ... ACPS_VIBC3 - Holo-[acyl-carrier-protein] synthase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical O...	158.0	[0..1]	[130..1]
ACPS_BRUME - Holo-[acyl-carrier-protein] synthase OS=Brucella melitensis GN=acpS PE=3 SV=1 gi\|254717156 - gi\|254717156\|ref\|ZP_05178967.1\| 4'-phosphopantetheinyl transferase [Brucella ceti M13/05/1] gi\|254729966 - gi\|254729966\|ref\|ZP_05188544.1\| 4'-phosphopantetheinyl transferase [Brucella abortus bv. 4 str. 292] ACPS_BRUME - Holo-[acyl-carrier-protein] synthase OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCT... gi\|254709785 - gi\|254709785\|ref\|ZP_05171596.1\| 4'-phosphopantetheinyl transferase [Brucella pinnipedialis B2/94] gi\|254713787 - gi\|254713787\|ref\|ZP_05175598.1\| 4'-phosphopantetheinyl transferase [Brucella ceti M644/93/1] ACPS_BRUO2 - Holo-[acyl-carrier-protein] synthase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=a... ACPS_BRUSI - Holo-[acyl-carrier-protein] synthase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=acpS PE=3 ... ACPS_BRUA2 - Holo-[acyl-carrier-protein] synthase OS=Brucella abortus (strain 2308) GN=acpS PE=3 SV=1 ACPS_BRUC2 - Holo-[acyl-carrier-protein] synthase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=acpS PE=3... ACPS_BRUAB - Holo-[acyl-carrier-protein] synthase OS=Brucella abortus biovar 1 (strain 9-941) GN=acpS PE=3 SV=1 ACPS_BRUAB - Holo-[acyl-carrier-protein] synthase OS=Brucella abortus GN=acpS PE=3 SV=1 ACPS_BRUSU - Holo-[acyl-carrier-protein] synthase OS=Brucella suis GN=acpS PE=3 SV=1 ACPS_BRUSU - Holo-[acyl-carrier-protein] synthase OS=Brucella suis biovar 1 (strain 1330) GN=acpS PE=3 SV=1 gi\|225627160, gi... - gi\|225627160\|ref\|ZP_03785198.1\| holo-acyl-carrier-protein synthase [Brucella ceti str. Cudo], gi\|225... gi\|254688935 - gi\|254688935\|ref\|ZP_05152189.1\| 4'-phosphopantetheinyl transferase [Brucella abortus bv. 6 str. 870] gi\|254693417 - gi\|254693417\|ref\|ZP_05155245.1\| 4'-phosphopantetheinyl transferase [Brucella abortus bv. 3 str. Tuly... ACPS_BRUMB - Holo-[acyl-carrier-protein] synthase OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=acpS PE... gi\|237815114, gi... - gi\|237815114\|ref\|ZP_04594112.1\| holo-(acyl-carrier-protein) synthase [Brucella abortus str. 2308 A],... gi\|254703993 - gi\|254703993\|ref\|ZP_05165821.1\| 4'-phosphopantetheinyl transferase [Brucella suis bv. 3 str. 686] ACPS_BRUA1 - Holo-[acyl-carrier-protein] synthase OS=Brucella abortus (strain S19) GN=acpS PE=3 SV=1 gi\|254707633 - gi\|254707633\|ref\|ZP_05169461.1\| 4'-phosphopantetheinyl transferase [Brucella pinnipedialis M163/99/1... gi\|254697070 - gi\|254697070\|ref\|ZP_05158898.1\| 4'-phosphopantetheinyl transferase [Brucella abortus bv. 2 str. 86/8... gi\|254701447 - gi\|254701447\|ref\|ZP_05163275.1\| 4'-phosphopantetheinyl transferase [Brucella suis bv. 5 str. 513]	157.0	[0..1]	[132..1]
ACPS_VIBCH - Holo-[acyl-carrier-protein] synthase OS=Vibrio cholerae GN=acpS PE=1 SV=1 ACPS_VIBCM - Holo-[acyl-carrier-protein] synthase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=acpS PE=3 SV=1 gi\|229507483, gi... - gi\|229507483\|ref\|ZP_04396988.1\| holo-[acyl-carrier protein] synthase [Vibrio cholerae BX 330286], gi... gi\|229512322, gi... - gi\|229512322\|ref\|ZP_04401801.1\| holo-[acyl-carrier protein] synthase [Vibrio cholerae B33], gi\|22935... gi\|229514083, gi... - gi\|229514083\|ref\|ZP_04403545.1\| holo-[acyl-carrier protein] synthase [Vibrio cholerae TMA 21], gi\|22... gi\|229344147, gi... - gi\|229519458\|ref\|ZP_04408901.1\| holo-[acyl-carrier protein] synthase [Vibrio cholerae RC9], gi\|22934... gi\|229606988, gi... - gi\|229606988\|ref\|YP_002877636.1\| holo-[acyl-carrier protein] synthase [Vibrio cholerae MJ-1236], gi\|... gi\|153830870, gi... - gi\|153830870\|ref\|ZP_01983537.1\| holo-(acyl-carrier-protein) synthase [Vibrio cholerae 623-39], gi\|14... gi\|149739263, gi... - gi\|153826900\|ref\|ZP_01979567.1\| holo-(acyl-carrier-protein) synthase [Vibrio cholerae MZO-2], gi\|149... gi\|121590990, gi... - gi\|121590990\|ref\|ZP_01678309.1\| holo-(acyl-carrier-protein) synthase [Vibrio cholerae 2740-80], gi\|1... gi\|153214508, gi... - gi\|153214508\|ref\|ZP_01949417.1\| holo-(acyl-carrier-protein) synthase [Vibrio cholerae 1587], gi\|1241... gi\|153222469, gi... - gi\|153222469\|ref\|ZP_01953203.1\| holo-(acyl-carrier-protein) synthase [Vibrio cholerae MAK 757], gi\|1... ACPS_VIBCH - Holo-[acyl-carrier-protein] synthase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inab... gi\|153819823, gi... - gi\|153819823\|ref\|ZP_01972490.1\| holo-(acyl-carrier-protein) synthase [Vibrio cholerae NCTC 8457], gi... gi\|254845287, gi... - gi\|75829318\|ref\|ZP_00758625.1\| COG0736: Phosphopantetheinyl transferase (holo-ACP synthase) [Vibrio ... gi\|225355074, gi... - gi\|75818653\|ref\|ZP_00748789.1\| COG0736: Phosphopantetheinyl transferase (holo-ACP synthase) [Vibrio ...	156.0	[0..1]	[130..1]
gi\|82541981 - gi\|82541981\|gb\|ABB82020.1\| acyl carrier protein synthase [Sinorhizobium meliloti]	154.0	[0..1]	[132..1]
ACPS_CAUCN - Holo-[acyl-carrier-protein] synthase OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=acpS PE=3 ... ACPS_CAUCR - Holo-[acyl-carrier-protein] synthase OS=Caulobacter crescentus GN=acpS PE=3 SV=1 ACPS_CAUCR - Holo-[acyl-carrier-protein] synthase OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=acpS PE...	154.0	[0..1]	[131..1]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIIGLGSDLI DIRRVEKSIE RFGERFTHRC FTDIERAKSD GRKNRAASYA KRFAAKEACS  60
   61 KALGTGLANG VFWKDMGVVN LPGGKPTMIL TNGAGARLAA MLPAGHRANI HLTITDDFPY 120
  121 AQAFVIIEAL PVNG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.69897
Match:	1f7tA
Description:	Holo-(acyl carrier protein) synthase ACPS
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
holo-[acyl-carrier-protein] synthase activity	3.16041523883346	bayes_pls_golite062009
phosphotransferase activity, for other substituted phosphate groups	3.07692326713136	bayes_pls_golite062009
catalytic activity	1.85383781679828	bayes_pls_golite062009
transferase activity	0.733560176609492	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.571740867528267	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: