YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15155908, gi\|...
Organism:	Agrobacterium tumefaciens str. C58
Length:	128 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15155908, gi|....

Description	E-value	Query Range	Subject Range
gi\|150395836, gi... - gi\|150395836\|ref\|YP_001326303.1\| putative monovalent cation/H+ antiporter subunit F [Sinorhizobium m...	111.0	[0..1]	[128..1]
gi\|642655 - gi\|642655\|gb\|AAA74237.1\| unknown [Sinorhizobium meliloti]	111.0	[0..1]	[128..8]
PHF2_RHIME - PhaF2 protein OS=Rhizobium meliloti (strain 1021) GN=phaF2 PE=3 SV=2 PHF2_RHIME - PhaF2 protein OS=Rhizobium meliloti GN=phaF2 PE=3 SV=2	109.0	[0..1]	[128..1]
gi\|40796042 - gi\|40796042\|gb\|AAR91687.1\| putative cation efflux system protein [Sinorhizobium fredii]	109.0	[0..1]	[124..1]
gi\|84712334, gi\|... - gi\|84712334\|ref\|ZP_01020246.1\| protein F of Na+/H+ antiporter of putative pH adaptation potassium ef...	103.0	[0..6]	[94..4]
gi\|66766796, gi\|... - gi\|66766796\|ref\|YP_241558.1\| putative monovalent cation/H+ antiporter subunit F [Xanthomonas campest... gi\|21229919, gi\|... - gi\|21229919\|ref\|NP_635836.1\| putative monovalent cation/H+ antiporter subunit F [Xanthomonas campest... gi\|167731632, gi... - gi\|188989872\|ref\|YP_001901882.1\| putative monovalent cation/H+ antiporter subunit F [Xanthomonas cam...	102.0	[0..1]	[94..1]
gi\|116873748, gi... - gi\|116873748\|ref\|YP_850529.1\| putative monovalent cation/H+ antiporter subunit F [Listeria welshimer... gi\|254901155, gi... - gi\|254901155\|ref\|ZP_05261079.1\| putative monovalent cation/H+ antiporter subunit F [Listeria monocyt... gi\|153198355, gi... - gi\|254831193\|ref\|ZP_05235848.1\| putative monovalent cation/H+ antiporter subunit F [Listeria monocyt... gi\|254914058, gi... - gi\|254914058\|ref\|ZP_05264070.1\| putative monovalent cation/H+ antiporter subunit F [Listeria monocyt... gi\|133726235, gi... - gi\|254873694\|ref\|ZP_05246404.1\| putative monovalent cation/H+ antiporter subunit F [Listeria monocyt... gi\|133729255, gi... - gi\|254829552\|ref\|ZP_05234239.1\| putative monovalent cation/H+ antiporter subunit F [Listeria monocyt... gi\|153180485, gi... - gi\|254938373\|ref\|ZP_05270070.1\| putative monovalent cation/H+ antiporter subunit F [Listeria monocyt... gi\|46908556, gi\|... - gi\|46908556\|ref\|YP_014945.1\| putative monovalent cation/H+ antiporter subunit F [Listeria monocytoge... gi\|254933447, gi... - gi\|254933447\|ref\|ZP_05266806.1\| putative monovalent cation/H+ antiporter subunit F [Listeria monocyt... gi\|25367051, gi\|... - pir\|\|AG1372 proteins involved in resistance to cholate and to NA(+) and in pH homeostasis homolog lm... gi\|16415004, gi\|... - pir\|\|AE1742 protein involved in resistance to cholate and to NA(+) and in pH homeostasis homolog lin... gi\|16804421 - gi\|16804421\|ref\|NP_465906.1\| putative monovalent cation/H+ antiporter subunit F [Listeria monocytoge... gi\|16801544 - gi\|16801544\|ref\|NP_471812.1\| putative monovalent cation/H+ antiporter subunit F [Listeria innocua Cl... gi\|47095862, gi\|... - gi\|47095862\|ref\|ZP_00233466.1\| Na+/H+ antiporter component F, putative [Listeria monocytogenes str. ... gi\|225877397, gi... - gi\|226224935\|ref\|YP_002759042.1\| a(+)/H(+) antiporter subunit F (Multiple resistance and pH homeosta... gi\|47018621, gi\|... - gi\|47092967\|ref\|ZP_00230747.1\| Na+/H+ antiporter component F, putative [Listeria monocytogenes str. ... gi\|254826356 - gi\|254826356\|ref\|ZP_05231357.1\| putative monovalent cation/H+ antiporter subunit F [Listeria monocyt... gi\|254854466 - gi\|254854466\|ref\|ZP_05243814.1\| putative monovalent cation/H+ antiporter subunit F [Listeria monocyt... gi\|254880413 - gi\|254880413\|ref\|ZP_05253123.1\| putative monovalent cation/H+ antiporter subunit F [Listeria monocyt... gi\|254992239 - gi\|254992239\|ref\|ZP_05274429.1\| putative monovalent cation/H+ antiporter subunit F [Listeria monocyt... gi\|255017389 - gi\|255017389\|ref\|ZP_05289515.1\| putative monovalent cation/H+ antiporter subunit F [Listeria monocyt... gi\|255022713 - gi\|255022713\|ref\|ZP_05294699.1\| putative monovalent cation/H+ antiporter subunit F [Listeria monocyt... gi\|255027066 - gi\|255027066\|ref\|ZP_05299052.1\| putative monovalent cation/H+ antiporter subunit F [Listeria monocyt... gi\|255029806 - gi\|255029806\|ref\|ZP_05301757.1\| putative monovalent cation/H+ antiporter subunit F [Listeria monocyt... gi\|255522394 - gi\|255522394\|ref\|ZP_05389631.1\| putative monovalent cation/H+ antiporter subunit F [Listeria monocyt... gi\|217963512, gi... - gi\|217963512\|ref\|YP_002349190.1\| Na(+)/H(+) antiporter subunit F (Multiple resistance and pHhomeosta... gi\|224500597 - gi\|224500597\|ref\|ZP_03668946.1\| putative monovalent cation/H+ antiporter subunit F [Listeria monocyt... gi\|224503728 - gi\|224503728\|ref\|ZP_03672035.1\| putative monovalent cation/H+ antiporter subunit F [Listeria monocyt...	102.0	[0..5]	[97..1]
gi\|110592947, gi... - gi\|121594819\|ref\|YP_986715.1\| multiple resistance and pH regulation protein F [Acidovorax sp. JS42],... gi\|221730026, gi... - gi\|222110582\|ref\|YP_002552846.1\| multiple resistance and pH regulation protein F [Diaphorobacter sp....	102.0	[0..1]	[94..1]
gi\|91799480, gi\|... - gi\|92116586\|ref\|YP_576315.1\| putative monovalent cation/H+ antiporter subunit F [Nitrobacter hamburg...	101.0	[0..4]	[94..2]
gi\|78046044, gi\|... - gi\|78046044\|ref\|YP_362219.1\| putative monovalent cation/H+ antiporter subunit F [Xanthomonas campest...	100.0	[0..1]	[94..1]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPELTVSFA TILATVVLSA AFLLTVYRVV VGPTLPDRIV ALDMLVGIAI GFIAVIAIRT  60
   61 GFTLYVDIAI ALGLVGFLAT VAFARFVLSR GPDDRRRRAT VLDGDRASEV IEKPMENDAR 120
  121 GKKGRGRR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	18.29243
Match:	PF04066.4
Description:	No description for PF04066.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.922	0.747	ion transmembrane transporter activity	f.18.1	F1F0 ATP synthase subunit A

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits