YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17739291, gi\|...
Organism:	Agrobacterium tumefaciens str. C58
Length:	125 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17739291, gi|....

Description	E-value	Query Range	Subject Range
gi\|40796039 - gi\|40796039\|gb\|AAR91684.1\| putative cation efflux system protein [Sinorhizobium fredii]	141.0	[0..1]	[125..1]
gi\|15073925 - gi\|15073925\|emb\|CAC45566.1\| Probable Na(+)/H(+)-antiporter [Sinorhizobium meliloti 1021] gi\|15964747 - gi\|15964747\|ref\|NP_385100.1\| putative monovalent cation/H+ antiporter subunit C [Sinorhizobium melil...	141.0	[0..1]	[125..1]
gi\|110633223, gi... - gi\|69279607\|ref\|ZP_00614413.1\| NADH-ubiquinone oxidoreductase, chain 4L [Mesorhizobium sp. BNC1], gi...	138.0	[0..1]	[125..1]
gi\|113876898, gi... - gi\|150395833\|ref\|YP_001326300.1\| putative monovalent cation/H+ antiporter subunit C [Sinorhizobium m...	138.0	[0..1]	[125..1]
gi\|115255790, gi... - gi\|116251142\|ref\|YP_766980.1\| putative monovalent cation/H+ antiporter subunit C [Rhizobium legumino...	135.0	[0..1]	[125..2]
gi\|77465721, gi\|... - gi\|77465721\|ref\|YP_355224.1\| putative monovalent cation/H+ antiporter subunit C [Rhodobacter sphaero... gi\|126464200, gi... - gi\|83374443\|ref\|ZP_00919215.1\| multicomponent K+:H+ antiporter subunit C [Rhodobacter sphaeroides AT...	133.0	[0..1]	[114..1]
gi\|90585842, gi\|... - gi\|90585842\|ref\|ZP_01241548.1\| Multicomponent Na+:H+ antiporter [Staphylococcus aureus subsp. aureus... gi\|110332129 - gi\|110332129\|gb\|ABG67112.1\| MrpC [Staphylococcus aureus] gi\|90583830, gi\|... - gi\|90583830\|ref\|ZP_01239580.1\| Multicomponent Na+:H+ antiporter [Staphylococcus aureus subsp. aureus... gi\|150373832, gi... - gi\|151221032\|ref\|YP_001331854.1\| putative monovalent cation/H+ antiporter subunit C [Staphylococcus ...	133.0	[0..2]	[117..21]
gi\|90437045, gi\|... - gi\|90581770\|ref\|ZP_01237550.1\| Na+/H+ antiporter [Vibrio angustum S14], gi\|90437045\|gb\|EAS62256.1\| N... gi\|90418821, gi\|... - gi\|90418821\|ref\|ZP_01226732.1\| Na+/H+ antiporter, MnhC subunit, NADH-ubiquinone/plastoquinone oxidor... gi\|90418821, gi\|... - gi\|90418821\|ref\|ZP_01226732.1\| Na+/H+ antiporter, MnhC subunit, NADH-ubiquinone/plastoquinone oxidor...	133.0	[0..1]	[125..1]
gi\|114705419, gi... - gi\|114705419\|ref\|ZP_01438327.1\| Na+/H+ antiporter [Fulvimarina pelagi HTCC2506], gi\|114540204\|gb\|EAU...	133.0	[0..1]	[125..1]
gi\|21111431, gi\|... - gi\|21229922\|ref\|NP_635839.1\| putative monovalent cation/H+ antiporter subunit C [Xanthomonas campest... gi\|167731635, gi... - gi\|188989875\|ref\|YP_001901885.1\| putative monovalent cation/H+ antiporter subunit C [Xanthomonas cam... gi\|66572131, gi\|... - gi\|66766799\|ref\|YP_241561.1\| putative monovalent cation/H+ antiporter subunit C [Xanthomonas campest...	132.0	[0..1]	[118..2]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAVFSILVG IFFSVAIYLM LSRHSIRMLL GIAILGNAVN LLLFTAGRLT RDVPPIIPAG  60
   61 MDTLPAGAAN PLPQALILTA IVISFSFFCF LLVLTWRAFQ ELQTDDTDEM RTAEPAGEPL 120
  121 PPLGY

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	17.60206
Match:	PF00420.15
Description:	No description for PF00420.15 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits