YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15155829, gi\|...
Organism:	Agrobacterium tumefaciens str. C58
Length:	271 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15155829, gi|....

Description	E-value	Query Range	Subject Range
gi\|25343479 - pir\|\|AB2680 conserved hypothetical protein Atu0842 [imported] - Agrobacterium tumefaciens (strain C5... gi\|159184492, gi... - gi\|17934750\|ref\|NP_531540.1\| hypothetical protein Atu0842 [Agrobacterium tumefaciens str. C58], gi\|1...	284.0	[0..10]	[271..1]
gi\|18653302 - gi\|18653302\|gb\|AAL77372.1\|AF449195_7 putative glycosyl transferase [Vibrio cholerae]	254.0	[0..14]	[270..2]
gi\|15602981, gi\|... - gi\|15602981\|ref\|NP_246053.1\| hypothetical protein PM1116 [Pasteurella multocida subsp. multocida str...	245.0	[0..13]	[270..6]
tr\|A0A085T8D8\|A0... - Glycosyltransferase sugar-binding region containing DXD motif family protein OS=Vibrio cholerae GN=D... gi\|254225695, gi... - gi\|75819366\|ref\|ZP_00749449.1\| COG3774: Mannosyltransferase OCH1 and related enzymes [Vibrio cholera...	244.0	[0..14]	[261..2]
tr\|D7HGC5\|D7HGC5... - Putative uncharacterized protein OS=Vibrio cholerae RC385 GN=VCRC385_03701 PE=4 SV=1 gi\|194534752, gi... - gi\|75823570\|ref\|ZP_00753062.1\| COG3774: Mannosyltransferase OCH1 and related enzymes [Vibrio cholera...	243.0	[0..20]	[261..10]
gi\|254847069, gi... - gi\|75831229\|ref\|ZP_00760495.1\| COG3774: Mannosyltransferase OCH1 and related enzymes [Vibrio cholera... gi\|75828223, gi\|... - gi\|75828223\|ref\|ZP_00757658.1\| COG3774: Mannosyltransferase OCH1 and related enzymes [Vibrio cholera... gi\|229369129, gi... - gi\|229606474\|ref\|YP_002877122.1\| mannosyltransferase OCH1-like enzyme [Vibrio cholerae MJ-1236], gi\|... gi\|229516283, gi... - gi\|229516283\|ref\|ZP_04405731.1\| mannosyltransferase OCH1 and related enzymes [Vibrio cholerae RC9], ... gi\|229356071, gi... - gi\|229506966\|ref\|ZP_04396474.1\| mannosyltransferase OCH1 and related enzymes [Vibrio cholerae BX 330... gi\|9654642, gi\|1... - gi\|9654642\|gb\|AAF93410.1\| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N169... gi\|227080454, gi... - gi\|227080454\|ref\|YP_002809005.1\| hypothetical protein VCM66_0222 [Vibrio cholerae M66-2], gi\|2270083... gi\|11354503 - pir\|\|D82349 conserved hypothetical protein VC0234 [imported] - Vibrio cholerae (strain N16961 serogr... gi\|121586362, gi... - gi\|121586362\|ref\|ZP_01676151.1\| conserved hypothetical protein [Vibrio cholerae 2740-80], gi\|1215494... gi\|153221445, gi... - gi\|153221445\|ref\|ZP_01952403.1\| conserved hypothetical protein [Vibrio cholerae MAK 757], gi\|1241196... gi\|126511179, gi... - gi\|153818290\|ref\|ZP_01970957.1\| conserved hypothetical protein [Vibrio cholerae NCTC 8457], gi\|12651... gi\|229509336, gi... - gi\|229509336\|ref\|ZP_04398819.1\| mannosyltransferase OCH1 and related enzymes [Vibrio cholerae B33], ...	243.0	[0..20]	[261..10]
gi\|121729449, gi... - gi\|75814866\|ref\|ZP_00745410.1\| COG3774: Mannosyltransferase OCH1 and related enzymes [Vibrio cholera...	242.0	[0..20]	[261..10]
gi\|126098117, gi... - gi\|126209325\|ref\|YP_001054550.1\| glycosyltransferase [Actinobacillus pleuropneumoniae L20], gi\|12609... gi\|165977307, gi... - gi\|165977307\|ref\|YP_001652900.1\| glycosyltransferase [Actinobacillus pleuropneumoniae serovar 3 str.... gi\|46143752 - gi\|46143752\|ref\|ZP_00204565.1\| COG3774: Mannosyltransferase OCH1 and related enzymes [Actinobacillus...	240.0	[0..16]	[270..9]
gi\|52306596, gi\|... - gi\|52424544\|ref\|YP_087681.1\| hypothetical protein MS0489 [Mannheimia succiniciproducens MBEL55E], gi...	213.0	[0..13]	[270..6]
gi\|119862715, gi... - gi\|119944111\|ref\|YP_941791.1\| glycosyl transferase [Psychromonas ingrahamii 37], gi\|119862715\|gb\|ABM...	193.0	[0..15]	[270..2]

Back

Predicted Domain #1

Region A:
Residues: [1-271]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLAIPHAGAL NLTKHGYNPI AYRAIKIGGN IVKVIFSIDL FLRPGTRKTL PAHQPARRRP  60
   61 KSEKAIPRII WQTNYSNRVT TPIYANFLFN RWLTPEFEYR YHDDEACQAY IDRHFPGRYA 120
  121 DAFRRLQVGA AKADFWRILV LLQDGGIYLD IDSNFAARPE DAIGPDEEAV FIAMKDGEVT 180
  181 NYFMASRPGH PALKLIADRI AQNIEEGTLV SVYDMTGPTV VHAVVKELGL PERNYREMCT 240
  241 QGQFTNKRAQ YADKKDGAWW AEQAKTSILK S

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.27
Match:	2bvlA
Description:	Crystal structure of the catalytic domain of toxin B from Clostridium difficile in complex with UDP, Glc and manganese ion
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.973365540409509	bayes_pls_golite062009
transferase activity	0.677420913179584	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: