YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15155496, gi\|...
Organism:	Agrobacterium tumefaciens str. C58
Length:	244 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15155496, gi|....

Description	E-value	Query Range	Subject Range
gi\|4982109, gi\|1... - gi\|4982109\|gb\|AAD36609.1\|AE001800_19 flagellar basal-body rod protein FlgG [Thermotoga maritima MSB8... gi\|7443089 - pir\|\|B72243 flagellar basal-body rod protein FlgG - Thermotoga maritima (strain MSB8) gi\|119886237, gi... - gi\|148270380\|ref\|YP_001244840.1\| flagellar basal-body rod protein FlgG [Thermotoga petrophila RKU-1]...	223.0	[0..1]	[241..1]
gi\|7443088 - pir\|\|C70372 flagellar hook basal body protein flgG - Aquifex aeolicus gi\|15606190, gi\|... - gi\|2983377\|gb\|AAC06963.1\| flagellar hook basal-body protein FlgG [Aquifex aeolicus VF5], gi\|15606190...	222.0	[0..1]	[241..1]
gi\|114566479, gi... - gi\|114566479\|ref\|YP_753633.1\| flagellar basal-body rod protein FlgG [Syntrophomonas wolfei subsp. wo...	222.0	[0..1]	[241..1]
gi\|94731432, gi\|... - gi\|94987183\|ref\|YP_595116.1\| flagellar basal body rod protein FlgG [Lawsonia intracellularis PHE/MN1...	222.0	[0..1]	[242..1]
gi\|58582198, gi\|... - gi\|58582198\|ref\|YP_201214.1\| flagellar biosynthesis cell-distal portion of basal-body rod [Xanthomon...	221.0	[0..1]	[238..81]
gi\|189018758, gi... - gi\|189026183\|ref\|YP_001933955.1\| flagellar basal-body rod protein [Treponema pallidum subsp. pallidu... gi\|15639944, gi\|... - gi\|3323281\|gb\|AAC65915.1\| flagellar basal-body rod protein (flgG-1) [Treponema pallidum subsp. palli... gi\|7443084 - pir\|\|C71259 probable flagellar basal-body rod protein (flgG-1) - syphilis spirochete	221.0	[0..1]	[241..1]
gi\|67677244, gi\|... - gi\|92114096\|ref\|YP_574024.1\| flagellar basal-body rod FlgG [Chromohalobacter salexigens DSM 3043], g...	219.0	[0..1]	[239..1]
gi\|46448340, gi\|... - gi\|46578928\|ref\|YP_009736.1\| flagellar basal body rod protein FlgG [Desulfovibrio vulgaris subsp. vu... gi\|241909539, gi... - gi\|241909539\|ref\|ZP_04794070.1\| flagellar basal-body rod protein FlgG [Desulfovibrio vulgaris RCH1],... gi\|120603471, gi... - gi\|120603471\|ref\|YP_967871.1\| flagellar basal body rod protein FlgG [Desulfovibrio vulgaris subsp. v...	218.0	[0..1]	[241..1]
gi\|146295641, gi... - gi\|82501402\|ref\|ZP_00886737.1\| Flagellar basal body and hook proteins [Caldicellulosiruptor saccharo...	216.0	[0..1]	[241..1]
gi\|89211345, gi\|... - gi\|89211345\|ref\|ZP_01189714.1\| Protein of unknown function DUF1078 [Halothermothrix orenii H 168], g...	215.0	[0..1]	[241..1]

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Predicted Domain #1

Region A:
Residues: [1-69]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSGLYVALS SQIALERRLT TISDNMANVN TVGFRGSEVK FDEMVAKNHN DMNAKVAFVS  60
   61 QGNDYLSTR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [70-244]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QGAFEQTGNS FDFAIKGDAW FALDTPDGQI LTRDGRFTMR PDGALISSSG YPVLDAGGGP  60
   61 IRLNPNGGPI TVGLDGAIRQ NDTIAASLGI FQADFSKGFL RHPNSGVKPV AQPVPVVNNH 120
  121 EVGVVQGYLE QSNVNGISQM TQLIQVNRAF ESISSMMRDT ESTFGEGIKT LGGAR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.045757
Match:	1wlgA
Description:	Crystal structure of FlgE31, a major fragment of the hook protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits