YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25522969, gi\|...
Organism:	Agrobacterium tumefaciens
Length:	166 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25522969, gi|....

Description	E-value	Query Range	Subject Range
gi\|15073597 - gi\|15073597\|emb\|CAC45239.1\| Flagellar transmembrane protein [Sinorhizobium meliloti 1021] gi\|15964420 - gi\|15964420\|ref\|NP_384773.1\| flagellar transmembrane protein [Sinorhizobium meliloti 1021]	248.0	[0..4]	[166..2]
gi\|2275166 - gi\|2275166\|gb\|AAB81418.1\| FliL [Sinorhizobium meliloti]	231.0	[0..4]	[166..2]
gi\|13472581, gi\|... - gi\|14023327\|dbj\|BAB49934.1\| mlr2923 [Mesorhizobium loti MAFF303099], gi\|13472581\|ref\|NP_104148.1\| hy...	229.0	[0..1]	[166..1]
gi\|110632651, gi... - gi\|69279021\|ref\|ZP_00614029.1\| Flagellar basal body-associated protein FliL [Mesorhizobium sp. BNC1]...	220.0	[0..17]	[166..1]
gi\|150395490, gi... - gi\|150395490\|ref\|YP_001325957.1\| flagellar basal body-associated protein FliL [Sinorhizobium medicae...	215.0	[0..4]	[166..2]
gi\|83269099 - gi\|83269099\|ref\|YP_418390.1\| flagellar basal body-associated protein FliL [Brucella melitensis biova... gi\|62197300, gi\|... - gi\|62317107\|ref\|YP_222960.1\| flagellar protein FliL [Brucella abortus bv. 1 str. 9-941], gi\|62197300... gi\|82939373 - gi\|82939373\|emb\|CAJ12323.1\| Flagellar basal body-associated protein FliL [Brucella melitensis biovar... gi\|225686017, gi... - gi\|225686017\|ref\|YP_002733989.1\| flagellar basal body-associated protein FliL [Brucella melitensis A... gi\|161337052, gi... - gi\|161620241\|ref\|YP_001594127.1\| flagellar basal body-associated protein FliL [Brucella canis ATCC 2... gi\|254691407 - gi\|254691407\|ref\|ZP_05154661.1\| flagellar basal body-associated protein FliL [Brucella abortus bv. 6... gi\|189020946, gi... - gi\|189022372\|ref\|YP_001932113.1\| Flagellar basal body-associated protein FliL [Brucella abortus S19]... gi\|254702581 - gi\|254702581\|ref\|ZP_05164409.1\| flagellar basal body-associated protein FliL [Brucella suis bv. 3 st... gi\|254706287 - gi\|254706287\|ref\|ZP_05168115.1\| flagellar basal body-associated protein FliL [Brucella pinnipedialis... gi\|254695295 - gi\|254695295\|ref\|ZP_05157123.1\| flagellar basal body-associated protein FliL [Brucella abortus bv. 3... gi\|254698390 - gi\|254698390\|ref\|ZP_05160218.1\| flagellar basal body-associated protein FliL [Brucella abortus bv. 2... gi\|23463498, gi\|... - gi\|23499921\|ref\|NP_699361.1\| flagellar protein FliL, putative [Brucella suis 1330], gi\|23463498\|gb\|A... gi\|254711419 - gi\|254711419\|ref\|ZP_05173230.1\| flagellar basal body-associated protein FliL [Brucella pinnipedialis... gi\|254731837 - gi\|254731837\|ref\|ZP_05190415.1\| flagellar basal body-associated protein FliL [Brucella abortus bv. 4... gi\|148369170, gi... - gi\|148557885\|ref\|YP_001257217.1\| putative flagellar protein FliL [Brucella ovis ATCC 25840], gi\|1483...	204.0	[0..5]	[166..7]
gi\|86280419, gi\|... - gi\|86356317\|ref\|YP_468209.1\| flagellar biosynthesis transmembrane protein [Rhizobium etli CFN 42], g...	202.0	[0..1]	[166..1]
gi\|115255135, gi... - gi\|116250487\|ref\|YP_766325.1\| orfc; method: conceptual translation supplied by author (flil) [Rhizob...	198.0	[0..8]	[166..10]
gi\|27381979, gi\|... - gi\|27381979\|ref\|NP_773508.1\| flagellar protein [Bradyrhizobium japonicum USDA 110], gi\|27355149\|dbj\|...	181.0	[0..15]	[166..1]
gi\|25526514 - pir\|\|AH3644 flagellar protein fliL [imported] - Brucella melitensis (strain 16M) gi\|17989426, gi\|... - gi\|17989426\|ref\|NP_542059.1\| flagellar protein FliL [Brucella melitensis 16M], gi\|17985303\|gb\|AAL543...	163.0	[0..46]	[166..3]

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Predicted Domain #1

Region A:
Residues: [1-166]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENEQAEGKK KSSPLVMTIA GVVILTLLGA GGGWLVGGMI APKVAATEAH ATAAAGGHGE  60
   61 KKGEGLDKID AEANGIVQLD PITTNLAYPS TNWVRLEVAL MFKGPVEVGL AEDIHQDIMA 120
  121 YVRTVSLQQL EGPRGFQYLK DDIQERVDLR SQGRVSKVMF RTFVIE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	48.585027
Match:	PF03748.5
Description:	No description for PF03748.5 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.626	N/A	N/A	a.24.17	Group V grass pollen allergen
View	Download	0.604	N/A	N/A	a.46.1	Methionine synthase domain
View	Download	0.590	N/A	N/A	a.133.1	Phospholipase A2, PLA2
View	Download	0.481	N/A	N/A	a.24.4	Hemerythrin
View	Download	0.467	N/A	N/A	a.24.10	Histidine-containing phosphotransfer domain, HPT domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits