YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15155485, gi\|...
Organism:	Agrobacterium tumefaciens str. C58
Length:	166 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15155485, gi|....

Description	E-value	Query Range	Subject Range
gi\|15073597 - gi\|15073597\|emb\|CAC45239.1\| Flagellar transmembrane protein [Sinorhizobium meliloti 1021] gi\|15964420 - gi\|15964420\|ref\|NP_384773.1\| flagellar transmembrane protein [Sinorhizobium meliloti 1021]	248.0	[0..4]	[166..2]
gi\|2275166 - gi\|2275166\|gb\|AAB81418.1\| FliL [Sinorhizobium meliloti]	231.0	[0..4]	[166..2]
gi\|13472581, gi\|... - gi\|14023327\|dbj\|BAB49934.1\| mlr2923 [Mesorhizobium loti MAFF303099], gi\|13472581\|ref\|NP_104148.1\| hy...	229.0	[0..1]	[166..1]
gi\|110632651, gi... - gi\|69279021\|ref\|ZP_00614029.1\| Flagellar basal body-associated protein FliL [Mesorhizobium sp. BNC1]...	220.0	[0..17]	[166..1]
gi\|150395490, gi... - gi\|150395490\|ref\|YP_001325957.1\| flagellar basal body-associated protein FliL [Sinorhizobium medicae...	215.0	[0..4]	[166..2]
gi\|83269099 - gi\|83269099\|ref\|YP_418390.1\| flagellar basal body-associated protein FliL [Brucella melitensis biova... gi\|62197300, gi\|... - gi\|62317107\|ref\|YP_222960.1\| flagellar protein FliL [Brucella abortus bv. 1 str. 9-941], gi\|62197300... gi\|82939373 - gi\|82939373\|emb\|CAJ12323.1\| Flagellar basal body-associated protein FliL [Brucella melitensis biovar... gi\|225686017, gi... - gi\|225686017\|ref\|YP_002733989.1\| flagellar basal body-associated protein FliL [Brucella melitensis A... gi\|161337052, gi... - gi\|161620241\|ref\|YP_001594127.1\| flagellar basal body-associated protein FliL [Brucella canis ATCC 2... gi\|254691407 - gi\|254691407\|ref\|ZP_05154661.1\| flagellar basal body-associated protein FliL [Brucella abortus bv. 6... gi\|189020946, gi... - gi\|189022372\|ref\|YP_001932113.1\| Flagellar basal body-associated protein FliL [Brucella abortus S19]... gi\|254702581 - gi\|254702581\|ref\|ZP_05164409.1\| flagellar basal body-associated protein FliL [Brucella suis bv. 3 st... gi\|254706287 - gi\|254706287\|ref\|ZP_05168115.1\| flagellar basal body-associated protein FliL [Brucella pinnipedialis... gi\|254695295 - gi\|254695295\|ref\|ZP_05157123.1\| flagellar basal body-associated protein FliL [Brucella abortus bv. 3... gi\|254698390 - gi\|254698390\|ref\|ZP_05160218.1\| flagellar basal body-associated protein FliL [Brucella abortus bv. 2... gi\|23463498, gi\|... - gi\|23499921\|ref\|NP_699361.1\| flagellar protein FliL, putative [Brucella suis 1330], gi\|23463498\|gb\|A... gi\|254711419 - gi\|254711419\|ref\|ZP_05173230.1\| flagellar basal body-associated protein FliL [Brucella pinnipedialis... gi\|254731837 - gi\|254731837\|ref\|ZP_05190415.1\| flagellar basal body-associated protein FliL [Brucella abortus bv. 4... gi\|148369170, gi... - gi\|148557885\|ref\|YP_001257217.1\| putative flagellar protein FliL [Brucella ovis ATCC 25840], gi\|1483...	204.0	[0..5]	[166..7]
gi\|86280419, gi\|... - gi\|86356317\|ref\|YP_468209.1\| flagellar biosynthesis transmembrane protein [Rhizobium etli CFN 42], g...	202.0	[0..1]	[166..1]
gi\|115255135, gi... - gi\|116250487\|ref\|YP_766325.1\| orfc; method: conceptual translation supplied by author (flil) [Rhizob...	198.0	[0..8]	[166..10]
gi\|27381979, gi\|... - gi\|27381979\|ref\|NP_773508.1\| flagellar protein [Bradyrhizobium japonicum USDA 110], gi\|27355149\|dbj\|...	181.0	[0..15]	[166..1]
gi\|25526514 - pir\|\|AH3644 flagellar protein fliL [imported] - Brucella melitensis (strain 16M) gi\|17989426, gi\|... - gi\|17989426\|ref\|NP_542059.1\| flagellar protein FliL [Brucella melitensis 16M], gi\|17985303\|gb\|AAL543...	163.0	[0..46]	[166..3]

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Predicted Domain #1

Region A:
Residues: [1-166]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENEQAEGKK KSSPLVMTIA GVVILTLLGA GGGWLVGGMI APKVAATEAH ATAAAGGHGE  60
   61 KKGEGLDKID AEANGIVQLD PITTNLAYPS TNWVRLEVAL MFKGPVEVGL AEDIHQDIMA 120
  121 YVRTVSLQQL EGPRGFQYLK DDIQERVDLR SQGRVSKVMF RTFVIE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	48.585027
Match:	PF03748.5
Description:	No description for PF03748.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits