YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25378705, gi\|...
Organism:	Agrobacterium tumefaciens
Length:	101 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25378705, gi|....

Description	E-value	Query Range	Subject Range
gi\|77381702, gi\|... - gi\|77457699\|ref\|YP_347204.1\| SelT/selW/selH selenoprotein [Pseudomonas fluorescens Pf0-1], gi\|773817...	182.0	[0..1]	[95..1]
gi\|88192923, gi\|... - gi\|88192926\|pdb\|2FA8\|D Chain D, Crystal Structure Of The Putative Selenoprotein W-Related Family Pro... gi\|88192923\|pdb\|... - Chain B, Crystal Structure Of The Putative Selenoprotein W-Related Family Protein From Agrobacterium...	182.0	[0..2]	[101..4]
gi\|13473369, gi\|... - gi\|14024118\|dbj\|BAB50722.1\| mll3944 [Mesorhizobium loti MAFF303099], gi\|13473369\|ref\|NP_104936.1\| hy...	182.0	[0..1]	[99..8]
gi\|24986246, gi\|... - gi\|26991198\|ref\|NP_746623.1\| hypothetical protein PP_4513 [Pseudomonas putida KT2440], gi\|24986246\|g...	182.0	[0..1]	[93..1]
gi\|67153923, gi\|... - gi\|67153923\|ref\|ZP_00415668.1\| Selenoprotein W-related [Azotobacter vinelandii AvOP], ref\|ZP_0009251... gi\|226720264, gi... - gi\|67153923\|ref\|ZP_00415668.1\| Selenoprotein W-related [Azotobacter vinelandii AvOP], gi\|67088056\|gb...	181.0	[0..1]	[98..1]
gi\|49075638 - gi\|49075638\|gb\|AAT49485.1\| PA3338 [synthetic construct]	181.0	[0..1]	[94..1]
gi\|107102870 - gi\|107102870\|ref\|ZP_01366788.1\| hypothetical protein PaerPA_01003938 [Pseudomonas aeruginosa PACS2] gi\|11349873 - pir\|\|D83228 hypothetical protein PA3338 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|32038438, gi\|... - gi\|32038438\|ref\|ZP_00136710.1\| COG3526: Uncharacterized protein conserved in bacteria [Pseudomonas a... gi\|218770689, gi... - gi\|218890466\|ref\|YP_002439330.1\| hypothetical protein PLES_17261 [Pseudomonas aeruginosa LESB58], gi... gi\|9949470, gi\|1... - gi\|9949470\|gb\|AAG06726.1\|AE004756_4 hypothetical protein PA3338 [Pseudomonas aeruginosa PAO1], gi\|15... gi\|84319921, gi\|... - gi\|84319921\|ref\|ZP_00968308.1\| COG3526: Uncharacterized protein conserved in bacteria [Pseudomonas a... gi\|126195403, gi... - gi\|84325991\|ref\|ZP_00974022.1\| COG3526: Uncharacterized protein conserved in bacteria [Pseudomonas a...	181.0	[0..1]	[94..1]
gi\|94413596, gi\|... - gi\|94413596\|ref\|ZP_01293475.1\| hypothetical protein PaerP_01004612 [Pseudomonas aeruginosa PA7], gi\|...	180.0	[0..1]	[94..1]
gi\|82713712, gi\|... - gi\|82739217\|ref\|ZP_00902028.1\| SelT/selW/selH selenoprotein [Pseudomonas putida F1], gi\|82713712\|gb\|...	179.0	[0..1]	[93..1]
gi\|95111902 - gi\|95111902\|emb\|CAK16626.1\| conserved hypothetical protein, selenoprotein W-related [Pseudomonas ent... gi\|104782915, gi... - gi\|95111902\|emb\|CAK16626.1\| conserved hypothetical protein, selenoprotein W-related [Pseudomonas ent...	179.0	[0..1]	[93..1]

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Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTETKPRIAI RYCTQCNWLL RAGWMAQEIL QTFASDIGEV SLIPSTGGLF EITVDGTIIW  60
   61 ERKRDGGFPG PKELKQRIRD LIDPERDLGH VDRTKHEGLD T

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.69897
Match:	2fa8A
Description:	Crystal Structure of the Putative Selenoprotein W-related family Protein from Agrobacterium tumefaciens
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits