YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15887575, gi\|...
Organism:	Agrobacterium tumefaciens str. C58
Length:	170 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15887575, gi|....

Description	E-value	Query Range	Subject Range
gi\|78518263, gi\|... - gi\|78692708\|ref\|ZP_00857222.1\| prepilin peptidase CpaA [Bradyrhizobium sp. BTAi1], gi\|78518263\|gb\|EA...	141.0	[0..2]	[163..8]
gi\|77688002, gi\|... - gi\|91977983\|ref\|YP_570642.1\| peptidase A24A, prepilin type IV [Rhodopseudomonas palustris BisB5], gi...	137.0	[0..1]	[164..2]
gi\|68190657, gi\|... - gi\|69278428\|ref\|ZP_00613534.1\| Peptidase A24A, prepilin type IV [Mesorhizobium sp. BNC1], gi\|6819065...	137.0	[0..1]	[169..1]
gi\|78494031, gi\|... - gi\|90425195\|ref\|YP_533565.1\| peptidase A24A, prepilin type IV [Rhodopseudomonas palustris BisB18], g...	137.0	[0..1]	[164..2]
gi\|27376552, gi\|... - gi\|27376552\|ref\|NP_768081.1\| pilus assembly protein prepilin peptidase subunit [Bradyrhizobium japon...	134.0	[0..1]	[164..2]
gi\|15073067 - gi\|15073067\|emb\|CAC41526.1\| Putative pilus assembly transmembrane protein [Sinorhizobium meliloti 10... gi\|15963892 - gi\|15963892\|ref\|NP_384245.1\| putative pilus assembly transmembrane protein [Sinorhizobium meliloti 1...	134.0	[0..1]	[169..5]
gi\|85699407, gi\|... - gi\|85713503\|ref\|ZP_01044493.1\| peptidase A24A, prepilin type IV [Nitrobacter sp. Nb-311A], gi\|856994...	134.0	[0..2]	[164..3]
RPA3676 - RPA3676 putative type IV prepilin peptidase, cpaA 4148883:4149407 forward MW:18714 gi\|167366690, gi... - gi\|192292564\|ref\|YP_001993169.1\| peptidase A24A prepilin type IV [Rhodopseudomonas palustris TIE-1],...	134.0	[0..1]	[164..2]
gi\|113871182, gi... - gi\|150398539\|ref\|YP_001329006.1\| peptidase A24A prepilin type IV [Sinorhizobium medicae WSM419], gi\|...	133.0	[0..1]	[168..1]
gi\|77740696, gi\|... - gi\|77740696\|ref\|ZP_00809182.1\| Peptidase A24A, prepilin type IV [Rhodopseudomonas palustris BisA53],...	132.0	[0..2]	[164..3]

Back

Predicted Domain #1

Region A:
Residues: [1-170]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVAAIFLIL PLCLCFAALN DLFSMTIPNV ITVVLLLSFA FIAPFAGMDF QTFGLSLAGG  60
   61 LIVFLGCFAL FAANVMGGGD AKLLTGAAVW YGFNISLVEF LLAVTLVGGA LTVGILLLRS 120
  121 RSQEIMAFGI PIPDSLMVAQ KIPYGIGIAI AGLLTYGEAP LVKAAIASIL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.16
Match:	1p7bA
Description:	Inward rectifier potassium channel Kirbac1.1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits