YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15155033, gi\|...
Organism:	Agrobacterium tumefaciens str. C58
Length:	185 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15155033, gi|....

Description	E-value	Query Range	Subject Range
gi\|117623164, gi... - gi\|117623164\|ref\|YP_852077.1\| 3-hydroxydecanoyl-(acyl carrier protein) dehydratase [Escherichia coli...	220.0	[0..14]	[185..66]
FABA_PSEF5 - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC ...	219.0	[0..16]	[184..1]
gi\|88859243, gi\|... - gi\|88859243\|ref\|ZP_01133883.1\| beta-hydroxydecanoyl thioester dehydrase (trans-2-decenoyl-ACP isomer...	219.0	[0..16]	[185..1]
FABA_BRUME - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Brucella melitensis biotype 1 (strain 16M / ... FABA_BRUSU - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Brucella suis biovar 1 (strain 1330) GN=fabA... FABA_BRUA2 - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Brucella abortus (strain 2308) GN=fabA PE=3 ... FABA_BRUAB - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Brucella abortus biovar 1 (strain 9-941) GN=... FABA_BRUAB - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Brucella abortus GN=fabA PE=3 SV=1 FABA_BRUMB - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Brucella melitensis biotype 2 (strain ATCC 2... FABA_BRUSU - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Brucella suis GN=fabA PE=3 SV=1 gi\|254694793 - gi\|254694793\|ref\|ZP_05156621.1\| 3-hydroxydecanoyl-(acyl carrier protein) dehydratase [Brucella abort... FABA_BRUME - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Brucella melitensis GN=fabA PE=3 SV=1 FABA_BRUA1 - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Brucella abortus (strain S19) GN=fabA PE=3 S... gi\|254690305 - gi\|254690305\|ref\|ZP_05153559.1\| 3-hydroxydecanoyl-(acyl carrier protein) dehydratase [Brucella abort... gi\|254700804 - gi\|254700804\|ref\|ZP_05162632.1\| 3-hydroxydecanoyl-(acyl carrier protein) dehydratase [Brucella suis ... gi\|254696422 - gi\|254696422\|ref\|ZP_05158250.1\| 3-hydroxydecanoyl-(acyl carrier protein) dehydratase [Brucella abort... gi\|254707311 - gi\|254707311\|ref\|ZP_05169139.1\| 3-hydroxydecanoyl-(acyl carrier protein) dehydratase [Brucella pinni... FABA_BRUSI - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Brucella suis (strain ATCC 23445 / NCTC 1051... gi\|254705172 - gi\|254705172\|ref\|ZP_05167000.1\| 3-hydroxydecanoyl-(acyl carrier protein) dehydratase [Brucella suis ... FABA_BRUC2 - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Brucella canis (strain ATCC 23365 / NCTC 108... gi\|254713427 - gi\|254713427\|ref\|ZP_05175238.1\| 3-hydroxydecanoyl-(acyl carrier protein) dehydratase [Brucella ceti ... gi\|254709148 - gi\|254709148\|ref\|ZP_05170959.1\| 3-hydroxydecanoyl-(acyl carrier protein) dehydratase [Brucella pinni... gi\|254731334 - gi\|254731334\|ref\|ZP_05189912.1\| 3-hydroxydecanoyl-(acyl carrier protein) dehydratase [Brucella abort... gi\|254716216 - gi\|254716216\|ref\|ZP_05178027.1\| 3-hydroxydecanoyl-(acyl carrier protein) dehydratase [Brucella ceti ...	218.0	[0..15]	[185..1]
gi\|91974702, gi\|... - gi\|91974702\|ref\|YP_567361.1\| 3-hydroxydecanoyl-(acyl carrier protein) dehydratase [Rhodopseudomonas ...	218.0	[0..13]	[185..11]
gi\|195940404 - gi\|195940404\|ref\|ZP_03085786.1\| 3-hydroxydecanoyl-(acyl carrier protein) dehydratase [Escherichia co... tr\|A0A0G3HV66\|A0... - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Escherichia coli (strain K12) GN=fabA PE=3 S... gi\|75195143 - gi\|75195143\|ref\|ZP_00705213.1\| COG0764: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) ... gi\|75190022 - gi\|75190022\|ref\|ZP_00703289.1\| COG0764: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) ...	218.0	[0..14]	[185..36]
gi\|26107375, gi\|... - gi\|26246975\|ref\|NP_753015.1\| 3-hydroxydecanoyl-ACP dehydratase [Escherichia coli CFT073], gi\|2610737... gi\|91071623, gi\|... - gi\|91210049\|ref\|YP_540035.1\| 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase [Escherichia coli ... gi\|227884087, gi... - gi\|227884087\|ref\|ZP_04001892.1\| 3-hydroxydecanoyl-(acyl carrier protein) dehydratase [Escherichia co... gi\|237707062, gi... - gi\|237707062\|ref\|ZP_04537543.1\| 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase [Escherichia sp...	218.0	[0..14]	[185..36]
FABA_AZOVD - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Azotobacter vinelandii (strain DJ / ATCC BAA... gi\|67155915, gi\|... - gi\|67155915\|ref\|ZP_00417542.1\| Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA [Azotobacter...	218.0	[0..16]	[185..1]
FABA_PSEAE - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Pseudomonas aeruginosa (strain ATCC 15692 / ... FABA_PSEA8 - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Pseudomonas aeruginosa (strain LESB58) GN=fa... gi\|126166641, gi... - gi\|84321574\|ref\|ZP_00969929.1\| COG0764: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) ... FABA_PSEAB - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) G... gi\|126193335, gi... - gi\|84328129\|ref\|ZP_00976139.1\| COG0764: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) ... FABA_PSEAE - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Pseudomonas aeruginosa GN=fabA PE=3 SV=1 FABA_PSEA7 - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Pseudomonas aeruginosa (strain PA7) GN=fabA ... gi\|107101042 - gi\|107101042\|ref\|ZP_01364960.1\| hypothetical protein PaerPA_01002072 [Pseudomonas aeruginosa PACS2]	217.0	[0..16]	[185..1]
FABA_PSEPF - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase OS=Pseudomonas fluorescens (strain Pf0-1) GN=fa...	217.0	[0..16]	[184..1]

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Predicted Domain #1

Region A:
Residues: [1-185]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSFNTSDWG SESGMATRQS SYNYEEILSC GRGELFGPGN AQLPLPPMLM VHRITEISET  60
   61 GGAFDKGFIR AEYDVSPDDW YFPCHFQGNP IMPGCLGLDG MWQLTGFFLG WLGEEGRGMA 120
  121 LSTGEVKFKG MVRPNTKLLQ YGIDFKRVMR GRLVLGTADG WLKADGETIY QASDLRVGLS 180
  181 KEKAA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.30103
Match:	2cf2C
Description:	No description for 2cf2C was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits