YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25302298, gi\|...
Organism:	Agrobacterium tumefaciens
Length:	273 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25302298, gi|....

Description	E-value	Query Range	Subject Range
PDRP_BRADU - Putative pyruvate, phosphate dikinase regulatory protein OS=Bradyrhizobium diazoefficiens (strain JC... Y637_BRAJA - Putative phosphotransferase blr0637 OS=Bradyrhizobium japonicum GN=blr0637 PE=3 SV=1	376.0	[0..1]	[270..1]
Y8I8_RHILO, Y448... - (Q98DY5) Hypothetical UPF0085 protein mlr4488, Putative phosphotransferase mlr4488 OS=Rhizobium loti... PDRP_RHILO - Putative pyruvate, phosphate dikinase regulatory protein OS=Rhizobium loti (strain MAFF303099) GN=ml...	376.0	[0..1]	[273..1]
Y001_RHIME - Putative phosphotransferase R00001 OS=Rhizobium meliloti GN=R00001 PE=3 SV=1 PDRP_RHIME - Putative pyruvate, phosphate dikinase regulatory protein OS=Rhizobium meliloti (strain 1021) GN=R000...	373.0	[0..1]	[273..1]
PDRP_SINMW - Putative pyruvate, phosphate dikinase regulatory protein OS=Sinorhizobium medicae (strain WSM419) GN...	370.0	[0..1]	[273..1]
PDRP_CHESB - Putative pyruvate, phosphate dikinase regulatory protein OS=Chelativorans sp. (strain BNC1) GN=Meso_...	368.0	[0..1]	[272..1]
PDRP_NOVAD - Putative pyruvate, phosphate dikinase regulatory protein OS=Novosphingobium aromaticivorans (strain ...	367.0	[0..8]	[269..4]
PDRP_BRASB - Putative pyruvate, phosphate dikinase regulatory protein OS=Bradyrhizobium sp. (strain BTAi1 / ATCC ...	365.0	[0..1]	[270..1]
PDRP_RHIEC - Putative pyruvate, phosphate dikinase regulatory protein OS=Rhizobium etli (strain CFN 42 / ATCC 512...	365.0	[0..1]	[273..1]
PDRP_GEOSL - Putative pyruvate, phosphate dikinase regulatory protein OS=Geobacter sulfurreducens (strain ATCC 51... Y450_GEOSL - Putative phosphotransferase GSU0450 OS=Geobacter sulfurreducens GN=GSU0450 PE=3 SV=1	365.0	[0..3]	[267..1]
gi\|113936714, gi... - gi\|167648970\|ref\|YP_001686633.1\| hypothetical protein Caul_5015 [Caulobacter sp. K31], gi\|167351400\|...	365.0	[0..6]	[273..27]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENKKSFFHL HLISDSTGET LMSAGRAVSA QFHTSMPVEH VYPMIRNQKQ LAQVIDLIDK  60
   61 EPGIVLYTIV DQQLAEFLDL RCHAIGVPCV NVLEPIIGIF QTYLGAPSRR RVGAQHALNA 120
  121 DYFARIEALN FAMD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	14.221849
Match:	PF03618.5
Description:	No description for PF03618.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.912	0.452	ATP binding	c.59.1	MurD-like peptide ligases, peptide-binding domain

Predicted Domain #2

Region A:
Residues: [135-273]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HDDGQMPETY DDADVVIIGI SRTSKTPTSI YLANRGIKTA NIPVVPNVPL PESLYAATRP  60
   61 LIVGLVATSD RISQVRENRD LGTTGGFDGG RYTDRATIME ELKYARALCA RNNWPLIDVT 120
  121 RRSIEETAAA ILALRPRTR

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.04
Match:	2iyqA
Description:	No description for 2iyqA was found.

Predicted functions:

Term	Confidence	Notes
binding	0.301700930786307	bayes_pls_golite062009
catalytic activity	0.176212702885001	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: