YRC Public Data Repository - Protein Structure Prediction

Protein:	RL27_LEGPH
Organism:	Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Length:	92 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL27_LEGPH.

Description	E-value	Query Range	Subject Range
RL27_XANP2 - 50S ribosomal protein L27 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rpmA PE=3 SV...	151.0	[0..1]	[90..1]
gi\|62257455 - gi\|62257455\|gb\|AAX77717.1\| unknown protein [synthetic construct]	147.0	[0..1]	[82..27]
gi\|238793007, gi... - gi\|77977595\|ref\|ZP_00833039.1\| COG0211: Ribosomal protein L27 [Yersinia intermedia ATCC 29909], gi\|2...	146.0	[0..1]	[85..1]
RL27_COXB1 - 50S ribosomal protein L27 OS=Coxiella burnetii (strain CbuK_Q154) GN=rpmA PE=3 SV=1 RL27_COXB2 - 50S ribosomal protein L27 OS=Coxiella burnetii (strain CbuG_Q212) GN=rpmA PE=3 SV=1 gi\|165917470, gi... - gi\|165918838\|ref\|ZP_02218924.1\| ribosomal protein L27 [Coxiella burnetii RSA 334], gi\|165917470\|gb\|E... RL27_COXBU - 50S ribosomal protein L27 OS=Coxiella burnetii GN=rpmA PE=3 SV=1 RL27_COXBU - 50S ribosomal protein L27 OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase I) GN=rpmA PE=3 SV=... RL27_COXBR - 50S ribosomal protein L27 OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=rpmA PE=3 SV=1 gi\|153207872, gi... - gi\|153207872\|ref\|ZP_01946449.1\| ribosomal protein L27 [Coxiella burnetii 'MSU Goat Q177'], gi\|120576...	146.0	[0..1]	[89..1]
RL27_PARDP - 50S ribosomal protein L27 OS=Paracoccus denitrificans (strain Pd 1222) GN=rpmA PE=3 SV=1	146.0	[0..1]	[90..1]
gi\|238715585, gi... - gi\|77958776\|ref\|ZP_00822804.1\| COG0211: Ribosomal protein L27 [Yersinia bercovieri ATCC 43970], gi\|2...	145.0	[0..1]	[85..1]
gi\|238718564, gi... - gi\|77961854\|ref\|ZP_00825683.1\| COG0211: Ribosomal protein L27 [Yersinia mollaretii ATCC 43969], gi\|2...	145.0	[0..1]	[85..1]
RL27_DESHD - 50S ribosomal protein L27 OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=rpmA PE=3 SV... RL27_DESHY - 50S ribosomal protein L27 OS=Desulfitobacterium hafniense (strain Y51) GN=rpmA PE=3 SV=1	145.0	[0..2]	[91..10]
gi\|114771044, gi... - gi\|114771044\|ref\|ZP_01448484.1\| 50S ribosomal protein L27 [alpha proteobacterium HTCC2255], gi\|11454... gi\|114771044 - gi\|114771044\|ref\|ZP_01448484.1\| 50S ribosomal protein L27 [alpha proteobacterium HTCC2255]	145.0	[0..1]	[89..1]
gi\|227113760 - gi\|227113760\|ref\|ZP_03827416.1\| 50S ribosomal protein L27 [Pectobacterium carotovorum subsp. brasili... RL27_ERWCT - 50S ribosomal protein L27 OS=Erwinia carotovora subsp. atroseptica GN=rpmA PE=3 SV=1 gi\|227328596 - gi\|227328596\|ref\|ZP_03832620.1\| 50S ribosomal protein L27 [Pectobacterium carotovorum subsp. carotov... gi\|255057112, gi... - gi\|255057112\|ref\|ZP_05309299.1\| ribosomal protein L27 [Pectobacterium wasabiae WPP163], gi\|254987072... RL27_PECAS - 50S ribosomal protein L27 OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=rpmA P...	145.0	[0..1]	[85..1]

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Predicted Domain #1

Region A:
Residues: [1-92]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHKKAGGST RNGRDSNPKY LGVKRFGGQF VNAGEIIVRQ RGTRFHPGPG VGCGRDHTLY  60
   61 ALVEGLVQFT TKGEKNRKYV TILPEQREEA AS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.69897
Match:	1vs6W
Description:	No description for 1vs6W was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.93798084434094	bayes_pls_golite062009
structural molecule activity	9.3625249805433	bayes_pls_golite062009
peptidyltransferase activity	3.94173449567504	bayes_pls_golite062009
transferase activity, transferring amino-acyl groups	0.479709297593055	bayes_pls_golite062009
catalytic activity	0.161830442565647	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: