YRC Public Data Repository - Protein Structure Prediction

Protein:	tr\|G3GX96\|G3GX96...
Organism:	Cricetulus griseus
Length:	168 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tr|G3GX96|G3GX96....

Description	E-value	Query Range	Subject Range
gi\|109474043, gi... - gi\|109474043\|ref\|XP_001078712.1\| PREDICTED: similar to actin related protein 2/3 complex, subunit 4 ...	332.0	[0..1]	[168..88]
gi\|89267932, gi\|... - gi\|89267932\|emb\|CAJ83261.1\| actin related protein 2/3 complex, subunit 4 [Xenopus tropicalis], gi\|52... gi\|52078353, gi\|... - gi\|52078353\|gb\|AAH82370.1\| LOC494639 protein [Xenopus laevis], gi\|148236486\|ref\|NP_001087956.1\| hypo...	302.0	[0..1]	[168..1]
gi\|61367681, gi\|... - gi\|61367681\|gb\|AAX43031.1\| actin related protein 2/3 complex subunit 4 [synthetic construct], gi\|613...	302.0	[0..1]	[168..1]
gi\|50603869, gi\|... - gi\|57524652\|ref\|NP_001003762.1\| actin related protein 2/3 complex, subunit 4, like [Danio rerio], gi...	302.0	[0..1]	[168..1]
gi\|12857620 - gi\|12857620\|dbj\|BAB31059.1\| unnamed protein product [Mus musculus]	301.0	[0..1]	[168..1]
gi\|47222889 - gi\|47222889\|emb\|CAF96556.1\| unnamed protein product [Tetraodon nigroviridis]	299.0	[0..2]	[167..2]

Back

Predicted Domain #1

Region A:
Residues: [1-168]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTATLRPYLS AVRATLQAAL CLENFSSQVV ERHNKPEVEV RSSKELLLQP VTISRNEKEK  60
   61 VLIEGSINSV RVSIAVKQAD EIEKILCHKF MRFMMMRAEN FFILRRKPVE GYDISFLITN 120
  121 FHTEQMYKHK LVDFVIHFME EIDKEISEMK LSVNARARIV AEEFLKNF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	82.522879
Match:	1k8kF
Description:	ARPC4 (20 kDa subunit)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
actin binding	6.0922573068519	bayes_pls_golite062009
actin filament binding	5.01990273175321	bayes_pls_golite062009
cytoskeletal protein binding	4.64781612293343	bayes_pls_golite062009
binding	2.16088008530271	bayes_pls_golite062009
structural constituent of cytoskeleton	1.37010524302636	bayes_pls_golite062009
protein binding	0.932082028882932	bayes_pls_golite062009
structural molecule activity	0.83499804393822	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: