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View Structure Prediction Details

Protein: tr|F6R0H3|F6R0H3...
Organism: Bos taurus
Length: 603 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tr|F6R0H3|F6R0H3....

Description E-value Query
Range		 Subject
Range
gi|118405042, gi... - gi|118405042|ref|NP_001072521.1| syntaxin binding protein 1 [Xenopus (Silurana) tropicalis], gi|1152...
 0.0 [1..603] [1..604]
gi|115305342 - gi|115305342|gb|AAI23521.1| STXBP1 protein [Bos taurus]
 0.0 [1..603] [1..603]
gi|17225417 - gi|17225417|gb|AAL37391.1|AF326545_1 syntaxin binding protein 1 [Mus musculus]
 0.0 [1..594] [1..594]
STXB1_PONAB - Syntaxin-binding protein 1 OS=Pongo abelii GN=STXBP1 PE=2 SV=1
STXB1_BOVIN - Syntaxin-binding protein 1 OS=Bos taurus GN=STXBP1 PE=1 SV=1
STXB1_MOUSE - Syntaxin-binding protein 1 OS=Mus musculus GN=Stxbp1 PE=1 SV=2
gi|123997501, gi... - gi|157929000|gb|ABW03785.1| syntaxin binding protein 1 [synthetic construct], gi|123997501|gb|ABM863...
STXB1_RAT - Syntaxin-binding protein 1 OS=Rattus norvegicus GN=Stxbp1 PE=1 SV=1
gi|999002 - gi|999002|gb|AAB34080.1| p67=67 kda neuronal-specific protein [rats, brain, Peptide, 594 aa]
STXB1_PONPY - Syntaxin-binding protein 1 - Pongo pygmaeus (Orangutan)
STXBP1 - syntaxin binding protein 1
ENSMMUT000000230... - null, null
 0.0 [1..594] [1..594]
STXB1_CHICK - Syntaxin-binding protein 1 OS=Gallus gallus GN=STXBP1 PE=2 SV=1
 0.0 [1..594] [1..594]
gi|51261450, gi|... - gi|51261450|gb|AAH80023.1| LOC100101272 protein [Xenopus laevis], gi|153792420|ref|NP_001093335.1| h...
 0.0 [1..594] [1..595]

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Predicted Domain #1
Region A:
Residues: [1-603] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPIGLKAVV GEKIMHDVIK KVKKKGEWKV LVVDQLSMRM LSSCCKMTDI MTEGITIVED  60
   61 INKRREPLPS LEAVYLITPS EKSVHSLISD FKDPPTAKYR AAHVFFTDSC PDALFNELVK 120
  121 SRAAKVIKTL TEINIAFLPY ESQVYSLDSA DSFQSFYSPH KAQMKNPILE RLAEQIATLC 180
  181 ATLKEYPAVR YRGEYKDNAL LAQLIQDKLD AYKADDPTMG EGPDKARSQL LILDRGFDPS 240
  241 SPVLHELTFQ AMSYDLLPIE NDVYKYETSG IGEARVKEVL LDEDDDLWIA LRHKHIAEVS 300
  301 QEVTRSLKDF SSSKRMNTGE KTTMRDLSQM LKKMPQYQKE LSKYSTHLHL AEDCMKHYQG 360
  361 TVDKLCRVEQ DLAMGTDAEG EKIKDPMRAI VPILLDANVS TYDKIRIILL YIFLKNGITE 420
  421 ENLNKLIQHA QIPPEDSEII TNMAHLGVPI VTDSTLRRRS KPERKERISE QTYQLSRWTP 480
  481 IIKDIMEDTI EDKLDTKHYP YISTRSSASF STTAVSARYG HWHKNKAPGE YRSGPRLIIF 540
  541 ILGGVSLNEM RCAYEVTQAN GKWEVLIGST HILTPTKFLM DLRHPDFRES SRVSFEDQAP 600
  601 TME

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 1dn1A
Description: Neuronal Sec1, NSec1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
SNARE binding 4.56428593085019 bayes_pls_golite062009
syntaxin binding 3.46044132736061 bayes_pls_golite062009
binding 2.7837022903231 bayes_pls_golite062009
protein binding 1.7224010512877 bayes_pls_golite062009
syntaxin-1 binding 0.269372794919901 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle