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View Structure Prediction Details

Protein: gi|46914947, gi|...
Organism: Photobacterium profundum SS9
Length: 125 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|46914947, gi|....

Description E-value Query
Range
Subject
Range
gi|50119177, gi|... - gi|50119177|ref|YP_048344.1| preprotein translocase subunit SecE [Pectobacterium atrosepticum SCRI10...
125.0 [0..1] [125..1]

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Predicted Domain #1
Region A:
Residues: [1-125]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKANAENQNS PSSMDGLKWV TIFALLAAAV VGNYLYSDVS VVLRAASVVI LVAAAGGIAI  60
   61 FTAKGKTAIT FARESRMEVR KVVWPTRQEA TQTTFIVLAV TVVMALALWG IDGIMVRLVR 120
  121 LVTGV

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Detection Method: PSI-BLAST
Confidence: 21.221849
Match: 2akhZ
Description: Normal mode-based flexible fitted coordinates of a non-translocating SecYEG protein-conducting channel into the cryo-EM map of a SecYEG-nascent chain-70S ribosome complex from E. coli
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle