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View Structure Prediction Details

Protein: gi|54310344, gi|...
Organism: Photobacterium profundum SS9
Length: 97 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|54310344, gi|....

Description E-value Query
Range
Subject
Range
gi|71909757, gi|... - gi|71909757|ref|YP_287344.1| SSU ribosomal protein S30P / sigma 54 modulation protein [Dechloromonas...
128.0 [0..3] [97..1]

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Predicted Domain #1
Region A:
Residues: [1-97]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMQINITGH HVEVTQALRE YVTTKFDKLE RFFDKINNVQ VILTVDKLHQ IAEATLHING  60
   61 GEIHAKADSE NMYAAIDSLT DKLVRQLNKH KDKLNSH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.30103
Match: 1n3gA
Description: Ribosome binding protein Y (YfiA homologue)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.47304811799096 bayes_pls_golite062009
protein binding 0.411183424287687 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle